| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0636 |
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| Symbol | |
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| ID | 3672601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 675129 |
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| End bp | 676808 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637709308 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_314394 |
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| Protein GI | 74316654 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3447] Predicted integral membrane sensor domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.445559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.916917 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGACAAAGC AGCTGCCGCT TCGCGATAGT GGCTGCATAA CGAGCGGAGG ACGGCAAAAT
GCCCACCGAA AGGATCGCCG CAGGCGATCG GTCGCCTCGT CGCGCCCACC TCGAGCCGAC
GGCTGCGTGA GTCAGTCGCT GCGGCACATG CTGTTGCTTC CGCTCGCGAC CGGGCTCGCG
TATTACCTGG GCGCGGTGCT CGGCGTCGCC GCCTCCGCGA TGTCGGAAGG CATCGCCATT
TTCTGGCTGC CGAACGGCAT CCTGCTGGTC GTGCTGCTCT CGACGGCACG GCACCACTGG
CCGCTGCATC TCGCCGCCGC GGTGCTCGCC GAAATCGCGG CCGACCTTCC GACTTTCACC
CTCCTCCAAG CGCTCGGTTT CGCCGCTGTC AACGTCGTCG AATGCCTGCT CGCCGCGCTC
CTGCTCGAGC GCCTCGCGCG GCCGTTCAGG CTCGAGAGCC TGCGCCACGT CATCGCTTTC
GGTGGCTACG TCTTGGTCAT CGCCTGCGGC CTCGCCGCCT TGCTCGGCGC CGCGATCTAT
TCGCTGACAG GGCAGGCGAC GACCGCGTTC TGGACCTACT GGCGGATATG GTGGTTCGGA
GACGGACTGG GCATGCTTCT GGTCGCGCCG CTCGCGCTGG GCTGGCTGCA GCCCCGGAGT
CGGCCCGGCG AGCGCCGGTC TTTCGAAGCG ACCGCCTTGT TCGGCCTCAC CCTGCTGTTC
TCGCTATGGG TTTTTTACCC GTCCGCCGCC CATGTCGAAG CGGCCTTTCC GCGGCGCGCC
TTCCTGCTGC TGCCGTTCGC GCTCTGGGCG GCGGCGCGCT TCGGCGTGTG GGGCACGGCC
AGCGTCGCAC TGCTGCTCGC CGGCATCGCG ATCCCCGCGA CGCTCACCGA TCGCGGCCCC
CTTGCGCTGG CGGCGCCCGA GGCCACGGTG CTGTTGTTGC AGGAATATCT TGTAGTGCTG
AGCCTGCCGG CACTCGCGCT GGCGGCGCTC CTGCAGGAGC TGCGCGACCG GAACGCGCGC
CTGCAGTCAC GGGAGACCGA ATTGCGCATG ACGCACGATG CGCTCGATCG AGTCAATCGC
GAACTCGAAA CGCGGGTGCG CACACGGACC GAAGCGCTCG AGGTCGCGAA CCGTCGTCTC
AAGGCGCTGG CCTCGGTCGA CTCGCTGACG GGGATCAGCA ACCGCCGTCA TTTCGTCGAG
CAGGCCAAGG CCGAAATCAG CCGTGCCAGA CGCCAAGGCC TGCCGCTGTC GGTGATCATG
TTCGACATCG ATTTCTTCAA GACGGTCAAC GACCGCTTCG GCCACGAGGC CGGGGACCAG
ACCTTGAAGG CGCTGACGAG CACGGTCAGC GGGAACCTTC GTGCCGGCGA CATTTTCGCG
CGGCTCGGCG GCGAGGAGTT CATCCTGATG CTGCCGGGGC AGGGCCTCGG TGACGCCGTG
CAGACCGCCG ACCGTGTGCG CGCGTTGGTC GCAGAGACGA GTCGCACCCA CTACCCAGTG
CCGATCACGC TCAGTGCGGG TGTCGCCGGG CTGGCCGGAT CGGAAGATCT CGACGGCCTG
CTGCGCCAGG CGGACCGCGC GCTCTACGCG GCGAAGCACC AGGGACGCGA CCGCGTGTGT
GTCGCGCCGG CGGCGGGTGC GCCCGAAACC CTGCCGAGCG CTGGGCCGTT CATGGGCTGA
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| Protein sequence | MTKQLPLRDS GCITSGGRQN AHRKDRRRRS VASSRPPRAD GCVSQSLRHM LLLPLATGLA
YYLGAVLGVA ASAMSEGIAI FWLPNGILLV VLLSTARHHW PLHLAAAVLA EIAADLPTFT
LLQALGFAAV NVVECLLAAL LLERLARPFR LESLRHVIAF GGYVLVIACG LAALLGAAIY
SLTGQATTAF WTYWRIWWFG DGLGMLLVAP LALGWLQPRS RPGERRSFEA TALFGLTLLF
SLWVFYPSAA HVEAAFPRRA FLLLPFALWA AARFGVWGTA SVALLLAGIA IPATLTDRGP
LALAAPEATV LLLQEYLVVL SLPALALAAL LQELRDRNAR LQSRETELRM THDALDRVNR
ELETRVRTRT EALEVANRRL KALASVDSLT GISNRRHFVE QAKAEISRAR RQGLPLSVIM
FDIDFFKTVN DRFGHEAGDQ TLKALTSTVS GNLRAGDIFA RLGGEEFILM LPGQGLGDAV
QTADRVRALV AETSRTHYPV PITLSAGVAG LAGSEDLDGL LRQADRALYA AKHQGRDRVC
VAPAAGAPET LPSAGPFMG
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