| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0616 |
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| Symbol | |
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| ID | 3673727 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 645161 |
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| End bp | 647185 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637709288 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_314374 |
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| Protein GI | 74316634 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.17381 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTGAGT GTACCGAGCC CATCTCGTCG CCGTGCGGGG GACGCTTCAA GCGCGCCGAA
ATCTGGAAGC TCGCGCTGCT CGCGGGCTTC GTCATCCAGT TGTTCCTGAT CCTGTTCGTC
ACGGCGATCG GGCTGCAGCA ACTGCGTATG ACCACCGAAA ACCTGAAGAC CGTGGTCGAC
GTCCACATGC GCAAGCAAAA CCTCACCAAG ACCATGGTTC TCACGGCGCG CGAGCGCACG
CTGATCATGT TCATGCTGAC CAAGATCGAC GACCCGTTCG AGCGCGACCA GCTGCTGCTG
CGCTTCCGCG AGAAGGGGTC GGAGTTCGTC GCCGCGCGCT TGCAACTGCT CGAACTGCCG
CTGAGCGCCC GCGAACGGCA CCTGATCGAC CTCCATAAGG AACGCATCGC TTTCGCCCAG
CCGATCCAGG AGGAAGTCAT CGAGCTGATC AGCGCGGATT TCACCCAGGA CGGCGTCGAC
CTCGCGCTCA GGCAGGCCAT CCCGGCGCAG AACAGCGTCA TGGTGCTTCT CTCGCGTCTC
GACGAAGAAG TGCATCGGGT CGCGATCGCG GCGAGCGAAA GGGCCTACGA AGCGCATCGC
GTGGCGCGCT TCTGGATGTA CTTCCTCTCC GGCATCGCGC TGCTCGTGGG CCTCGTCGTC
GCCGCCGCGG TGCTGTTCTA TTCCGCGCGC TTCAGCCGCG AGCGCGAACG TCTGGTGACC
AAGGACACGC TCACCGGCCT GCCCAACCGC ATGCTGCTGC GCGACCGCCT CGAGCAGGCA
CTCGCACGCG CCCGTCGGCG CGGCACGCTC GTCGGCGTGA TGTTCATCGA CCTCGACCGC
TTCAAGCGCG TCAACGACAC CCTCGGCCAC GCCAGCGGCG ACGAACTCAT CTGCGAAGTC
GGCCAGCGCC TGCGCGCGAT CGCGCGCGAC GAGGACACGG TGGCGAGGCT CGGCGGCGAC
GAGTTCGTCG TCGTCGCCAA CGATGCGCGC GGCGTCGGCC AGATCCTCCA TATCGTCGAA
AAGGTCCGCG CGGCACTCGC CGCCCCGTAT CGGGTCGGCG AACGCGAACT CTTCTGCTGC
AGCAGCATCG GCATCAGCGT GTTTCCGAAC GACGGCGCCG ACTGCAGCAG TCTGCTGAAG
AACGCCGACA CCGCGATGTA CCACGCCAAG GGCAGCGGAC GGGACCGTTT CCAGCTTTAC
GACGCGGGCA TGAACGCGAT GGCCGAGGAG CGGCTGCAAC TCGAAACCGA CCTGCACTAC
GCGCTCGAAC GCGGCGAGTT CGTGCTGCAC TACCAGCCGC AGATCGATCT CACGAGCGGC
CGCGTCTGTG CGGTCGAGGC CCTGGTCCGC TGGAACCATC CGCAGAAAGG CGTTCTGGCG
CCCGCGTCGT TCCTCGAAAT GCTCGAAGAG ACCGGCCAGA TACTCGACGT CGGCCGTGCG
CTTCTGCTCG CCGCGTGCCA ACAGACCGCA CAGTGGCACG CCGCCGGCTT CAAGGATCTC
GACGTCGCCG TCAACCTCTC GGGCAAGGAA TTCTGGCACG GTTCGCTGAT CAGCTCGATC
AGCGAGGCAC TGAAGCTGTC GGGCCTGCCC GCGCAATTCC TGCAGATCGA ACTGACCGAA
AGCATTTTCA TGAAGGACAT CGACAATGCC GTCGCGCGGA TTCAGGCGCT CAAGGCGCTC
GGCGTCGCGG TCGCGGTCGA CGACTTCGGC ACCGGCTATT CGTCGCTCGC CCACCTCAAG
CGCTTTCCGG TCAACGTCCT CAAGATCGAC CGCTATTTCA TCAACGAACT GCCTACCGCC
TCGGTCAACG AAGCGCTCGT CGCATCGATC CTGGCGCTCA GCGACGGGCT GCATCTCGAC
GCCGTCGCCG AGGGCGTGGA AAACATCGAA CAGCTCGCGC GGCTGCGGCA GCTCGGCTGC
CGCATCGTCC AGGGTTATCT CGTCAGCAAG CCGGTCGCGG CCGAGCAGTT GACCGCGCTG
CTGCGCCGCG ACTGGCACGA AGTGCTCGGC GGCGCCGTGG CCTAG
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| Protein sequence | MPECTEPISS PCGGRFKRAE IWKLALLAGF VIQLFLILFV TAIGLQQLRM TTENLKTVVD
VHMRKQNLTK TMVLTARERT LIMFMLTKID DPFERDQLLL RFREKGSEFV AARLQLLELP
LSARERHLID LHKERIAFAQ PIQEEVIELI SADFTQDGVD LALRQAIPAQ NSVMVLLSRL
DEEVHRVAIA ASERAYEAHR VARFWMYFLS GIALLVGLVV AAAVLFYSAR FSRERERLVT
KDTLTGLPNR MLLRDRLEQA LARARRRGTL VGVMFIDLDR FKRVNDTLGH ASGDELICEV
GQRLRAIARD EDTVARLGGD EFVVVANDAR GVGQILHIVE KVRAALAAPY RVGERELFCC
SSIGISVFPN DGADCSSLLK NADTAMYHAK GSGRDRFQLY DAGMNAMAEE RLQLETDLHY
ALERGEFVLH YQPQIDLTSG RVCAVEALVR WNHPQKGVLA PASFLEMLEE TGQILDVGRA
LLLAACQQTA QWHAAGFKDL DVAVNLSGKE FWHGSLISSI SEALKLSGLP AQFLQIELTE
SIFMKDIDNA VARIQALKAL GVAVAVDDFG TGYSSLAHLK RFPVNVLKID RYFINELPTA
SVNEALVASI LALSDGLHLD AVAEGVENIE QLARLRQLGC RIVQGYLVSK PVAAEQLTAL
LRRDWHEVLG GAVA
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