Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0448 |
Symbol | |
ID | 3673076 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 468255 |
End bp | 469343 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637709114 |
Product | outer membrane protein (porin) |
Protein accession | YP_314206 |
Protein GI | 74316466 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0000207768 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.425074 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAT CCCTGATCGC CCTGGCCGTC GCCAGCGCCG TCTCCGCCCC GGCTTTCGCG GCCACCAGCA ACGTCGACGT CTACGGCGTG CTGAACTTCG CCGTCGCGAG CATCGATTCC GACACCGGCA CCGAAGATCG CCAGCTCTCG CTTGCTTCCC AGAACAGCCG CATCGGCTTC AAGGGCGCCG AAGACCTCGG CGGCGGCCTG TCCGCGATCT GGCAGATCGA GTCGACCGTT TTTCTGGACG AAAGCGGCGG CCCCTTCGCG ACCCGCAACA CCTTCGTCGG CCTCAAGGGC GGTTTCGGTA GCGTTCTGCT CGGCCGTCAC GACACCCCGG TCAAGATGCT GCGCGGCAAG GTCGACAACT TCGGCGACAC CCTGGCCGAC TCGCGCAACC TGCTGGGCGC GAACGCCGTT TCTGGCTCGT CCTCCTATGA TCTGCGTCCC AACAATACCG TGGTTTACAT TTCCCCGAAC CTCAGCGGCC TGACCCTGAT GGCAGCCTAC ACTGCCGATC ACGGCGTTTC TGGTGCGAGC GCAACCTTCC CCAGCTGCGT GGCCGGTGCG GATTGTAACG ATCGCGACGG CTACAGCGTG TCCGCCGACT ACGCCAACGG TCCCCTGATG CTGGGTCTGG GCTATGAGCG TCACAACACG CTGATCAATG CGACCAACGA CGAAATCGAC CGCAGCATCT GGCGCGCCGT CGCCGGCTTC AACATCGCCG ATTTCAAGCT GGGCGCGGTG TACGAGCGCG CGTCGGGCGA CGCCGCACTG GCGTCCGACG ATCGCAACGG CTGGGGCCTG TTCGCCAACT ACGCGCTGGG CAACGTCGTC CTCAAGGCCA ACTACCTCAC GGTCGGCGAC TATGAGGGTG TGAACGACAG CGGCGCCAAG CAGTACACCG TCGGCGTCGA CTACAACCTG TCCAAGCGTA CGACCGCCTC CCTGTTCTAC GCGCAGATCA AGAACGACAC GAACGCCGGA TTCGACATCG GCCGCGCCCA GGGCGTGAGC GACTCGACCA CTGTCGCAAA TGGCGCGGAT CCTTCGACCT TCGGCCTCGG CCTGAAGCAC TCCTTCTGA
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Protein sequence | MKKSLIALAV ASAVSAPAFA ATSNVDVYGV LNFAVASIDS DTGTEDRQLS LASQNSRIGF KGAEDLGGGL SAIWQIESTV FLDESGGPFA TRNTFVGLKG GFGSVLLGRH DTPVKMLRGK VDNFGDTLAD SRNLLGANAV SGSSSYDLRP NNTVVYISPN LSGLTLMAAY TADHGVSGAS ATFPSCVAGA DCNDRDGYSV SADYANGPLM LGLGYERHNT LINATNDEID RSIWRAVAGF NIADFKLGAV YERASGDAAL ASDDRNGWGL FANYALGNVV LKANYLTVGD YEGVNDSGAK QYTVGVDYNL SKRTTASLFY AQIKNDTNAG FDIGRAQGVS DSTTVANGAD PSTFGLGLKH SF
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