Gene Tbd_0448 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0448 
Symbol 
ID3673076 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp468255 
End bp469343 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content64% 
IMG OID637709114 
Productouter membrane protein (porin) 
Protein accessionYP_314206 
Protein GI74316466 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3203] Outer membrane protein (porin) 
TIGRFAM ID[TIGR03304] outer membrane insertion C-terminal signal 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000207768 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.425074 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAT CCCTGATCGC CCTGGCCGTC GCCAGCGCCG TCTCCGCCCC GGCTTTCGCG 
GCCACCAGCA ACGTCGACGT CTACGGCGTG CTGAACTTCG CCGTCGCGAG CATCGATTCC
GACACCGGCA CCGAAGATCG CCAGCTCTCG CTTGCTTCCC AGAACAGCCG CATCGGCTTC
AAGGGCGCCG AAGACCTCGG CGGCGGCCTG TCCGCGATCT GGCAGATCGA GTCGACCGTT
TTTCTGGACG AAAGCGGCGG CCCCTTCGCG ACCCGCAACA CCTTCGTCGG CCTCAAGGGC
GGTTTCGGTA GCGTTCTGCT CGGCCGTCAC GACACCCCGG TCAAGATGCT GCGCGGCAAG
GTCGACAACT TCGGCGACAC CCTGGCCGAC TCGCGCAACC TGCTGGGCGC GAACGCCGTT
TCTGGCTCGT CCTCCTATGA TCTGCGTCCC AACAATACCG TGGTTTACAT TTCCCCGAAC
CTCAGCGGCC TGACCCTGAT GGCAGCCTAC ACTGCCGATC ACGGCGTTTC TGGTGCGAGC
GCAACCTTCC CCAGCTGCGT GGCCGGTGCG GATTGTAACG ATCGCGACGG CTACAGCGTG
TCCGCCGACT ACGCCAACGG TCCCCTGATG CTGGGTCTGG GCTATGAGCG TCACAACACG
CTGATCAATG CGACCAACGA CGAAATCGAC CGCAGCATCT GGCGCGCCGT CGCCGGCTTC
AACATCGCCG ATTTCAAGCT GGGCGCGGTG TACGAGCGCG CGTCGGGCGA CGCCGCACTG
GCGTCCGACG ATCGCAACGG CTGGGGCCTG TTCGCCAACT ACGCGCTGGG CAACGTCGTC
CTCAAGGCCA ACTACCTCAC GGTCGGCGAC TATGAGGGTG TGAACGACAG CGGCGCCAAG
CAGTACACCG TCGGCGTCGA CTACAACCTG TCCAAGCGTA CGACCGCCTC CCTGTTCTAC
GCGCAGATCA AGAACGACAC GAACGCCGGA TTCGACATCG GCCGCGCCCA GGGCGTGAGC
GACTCGACCA CTGTCGCAAA TGGCGCGGAT CCTTCGACCT TCGGCCTCGG CCTGAAGCAC
TCCTTCTGA
 
Protein sequence
MKKSLIALAV ASAVSAPAFA ATSNVDVYGV LNFAVASIDS DTGTEDRQLS LASQNSRIGF 
KGAEDLGGGL SAIWQIESTV FLDESGGPFA TRNTFVGLKG GFGSVLLGRH DTPVKMLRGK
VDNFGDTLAD SRNLLGANAV SGSSSYDLRP NNTVVYISPN LSGLTLMAAY TADHGVSGAS
ATFPSCVAGA DCNDRDGYSV SADYANGPLM LGLGYERHNT LINATNDEID RSIWRAVAGF
NIADFKLGAV YERASGDAAL ASDDRNGWGL FANYALGNVV LKANYLTVGD YEGVNDSGAK
QYTVGVDYNL SKRTTASLFY AQIKNDTNAG FDIGRAQGVS DSTTVANGAD PSTFGLGLKH
SF