| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0417 |
|---|
| Symbol | rplE |
|---|
| ID | 3671684 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 443144 |
|---|
| End bp | 443683 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637709083 |
|---|
| Product | 50S ribosomal protein L5 |
|---|
| Protein accession | YP_314175 |
|---|
| Protein GI | 74316435 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0094] Ribosomal protein L5 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0000918773 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.235995 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCGTT TTCAAGAGTT TTATCGTGAG ACGGTGGTGC CGAAACTGAT CGAGCAGTTC
GGCTACAAGT CCGTCATGGA AGTCCCTCGC ATCCAGAAGA TCACCCTGAA CATGGGTGTG
GGCGAGGCGG TGGCCGACAA GAAGGTCATG GACCACGCGG TCGCCGACAT GCAGAAGATC
GCGGGGCAGA AGCCGGTCGT TACCAAGTCG AAGAAGTCGA TCGCGGGCTT CAAGATCCGC
GAGAACTACC CGGTTGGCTG CATGGTCACC CTGCGCCGCG GGCAGATGTA CGAGTTCCTC
GATCGTCTCG TGACTGTCGC GCTGCCGCGT GTTCGCGACT TTCGTGGTGT TTCCGGCAAG
TCCTTCGATG GCCGTGGCAA CTACAACATG GGCATCAAGG AACAGATCAT CTTCCCGGAG
ATCGAGTACG ACAAGATCGA TGCGTTGCGT GGGATGAACA TCACGATCAC CACCACCGCG
AAGACTGATG ATGAAGCGCG CGCATTGCTC GCCGCCTTCA GTTTCCCGTT CAAGAATTGA
|
|---|
| Protein sequence | MARFQEFYRE TVVPKLIEQF GYKSVMEVPR IQKITLNMGV GEAVADKKVM DHAVADMQKI
AGQKPVVTKS KKSIAGFKIR ENYPVGCMVT LRRGQMYEFL DRLVTVALPR VRDFRGVSGK
SFDGRGNYNM GIKEQIIFPE IEYDKIDALR GMNITITTTA KTDDEARALL AAFSFPFKN
|
|---|
| |