| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0398 |
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| Symbol | |
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| ID | 3671665 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 424459 |
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| End bp | 428538 |
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| Gene Length | 4080 bp |
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| Protein Length | 1359 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637709064 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_314156 |
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| Protein GI | 74316416 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0653652 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0371296 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTATA CCTTTACCGA GAAAAAACGT CTGCGCAAGA GTTTTGCCAG CCGGACCAAC
ACGCTTCCGG TGCCTTTTCT TCTGGCGACC CAGCTTGAGT CCTATCGGGC TTTCCTGCAG
GAGGGCCGTT CGCGCGACGA GCGCCTGAAC GAGGGCCTGC AAGCCGCGTT CACATCGATT
TTCCCGATCG AAAGCCATTC CAAGAACGCC AGGCTCGAAT ACGTCAGCTA TCAACTCGGC
GAGCCGGTCT TCGACATCAA GGAATGCCAG CAGCGCGGCC TCACCTATTG TGCGCCGCTG
CGCGCCAAGG TGCGCCTGGT CATCATGGAC AAGGAGGCGT CCAAGCCGAC GATCAAGGAG
GTCAAGGAGC AGGAGGTCTA CATGGGCGAG ATTCCGCTCA TGACGCCGAC CGGCTCGTTC
GTCATCAACG GCACCGAGCG CGTCATCGTG TCGCAGCTGC ACCGCTCGCC GGGCGTATTC
TTCGAGCACG ACCGCGGCAA GACGCACAGC TCGGGGAAGC TCTTGTTCTC GGCGCGCGTC
ATTCCCTACC GCGGCTCGTG GCTCGACTTC GAGTTTGACG CCAAGGACAT CCTGTTCTTC
CGCGTCGACC GTCGCCGCAA GATGCCGGTC ACGATCCTGC TCAAGGCGCT CGGCTACACG
CCGGAGAGCA TTCTGGACGC GTTCTTCAAT AAGGACACGT TCTACATCAA CACCCTCGGC
ATCCAGTTCG AGCTCGTTCC CGAGCGGCTG CGCGGCGAGA TCGCGCGTTT CGACATCTGC
GGCAAGGACG ACAAGGTCAT CGTCGCCAAG GACAAGCGCA TCACGGCCAA GCACATCCGT
GAACTCGACG CCGCCGGCGT CAAGAAATGG GCCGTGCCGG GCGAATTCGT CGTCGGCCGC
GTGCTCGCGC ACGACGTCGT CGACAAGGAC ACGGGCGAGC TCGTCGCGCG CGCCAACGAC
GAAATCACCG AGGAGTTGCT GAAGAAGCTG GCGGCCGCCG GCATCGACAA GTTCCAGACC
CTCTACACCA ACGACCTCGA CCACGGCGCA TTCATCTCGC AGACGCTGCG TACCGACGAC
ACGACCGACG AGTATGCCGC CAAGGTCGCG ATCTACCGCA TGATGCGCCC GGGCGAGCCG
CCGACCGAGG ACGCCGTCAA CGCGTTGTTC GTCAACCTGT TCTTCAGCGA CGAGCGCTAC
GATCTGTCGG CCGTCGGGCG CATGAAGTTC AACCGCCGCA TCGGCCGCGA CGAGCTGACC
GGAACCGGCA CGCTGTCGAC CGAAGACATC GTGGCCGTGA TCAAGATCCT GGTCGAACTG
CGCAATGGCC GCGGCGAGAT CGACGACATC GACCACCTCG GCAACCGTCG CGTGCGCTCG
GTCGGCGAAC TCGCCGAGAA CCAGTTCCGC GCCGGCCTCG TGCGCGTCGA GCGCGCGGTG
CGCGAGCGCC TGAGCCAGGC GGAATCGGAC AACCTGATGC CGCACGATCT GATCAATGCC
AAGCCCGTCT CGGCCGCGAT CAAGGAGTTC TTCGGGTCGA GCCAGCTCTC GCAGTTCATG
GACCAGACCA ACCCCTTGTC CGAGATCACC CACAAGCGCC GTGTCTCGGC GCTCGGCCCG
GGCGGTCTGA CCCGCGAGCG CGCCGGTTTC GAGGTGCGCG ACGTGCACCC GACTCACTAT
GGCCGCGTCT GCCCGATCGA AACGCCGGAA GGTCCGAACA TCGGTCTGAT CAACTCGCTC
GCGCTGTTCG CGCGCACCAA CTGGTACGGC TTCATCGAGA CGCCCTACCG CAAGGTCGTC
GACAACAAGG TCACCGACGA AATCGAATAC CTCTCGGCGA TCGAGGAGTC CAAGTACGTG
ATCGCGCAGG CAAACGCCGA GCTCGACGCC AAGGGCAAGT TCAAGGACGA CCTCGTGTCG
TGCCGGTTCA AGAACGAATT CACGCTGTCG GCCCCCGACC GCATCGAATA CATGGACGTC
GCGCCGGCAC AGATCGTGTC GGTGGCCGCC TCGCTGATCC CCTTCCTCGA GCATGACGAC
GCGAACCGCG CGCTCATGGG CTCGAACATG CAGCGGCAGG CCGTGCCCTG CCTGCGTCCG
GAAAAACCCT TCGTCGGGAC CGGCATCGAG CGCACCGCCG CGGTCGACTC CGGTACCGTC
GTCATCGCCC ACCGCGGCGG CCGCGTCGAC TATGTGGACG CCGGGCGGAT CGTGATCCGC
GTGCACGACG AAGAGGCGCG CGCGGGCGAG GTCGGCGTCG ACATCTATTC GCTGATCAAG
TACACGCGCT CGAACCAGAA CACCAACATC AACCAGCGAC CGCTGGTCAA AGTGGGCGAC
GTGATCGCAC GCGGCGACGT CATTGCCGAC GGCGCCTCGA CCGACATGGG CGAGCTCGCG
CTGGGCCAGA ACATGCTGGT CGCGTTCATG CCGTGGAACG GCTACAACTT CGAAGACTCG
ATCCTGATCA ACGAGAAGGT CGTCGCGGAA GACCGTTACA CCTCGATCCA CATCGAGGAA
CTGTCGGTCG TTGCGCGTGA CACCAAGCTC GGGCCCGAAG AAATCACGCG TGACATTTCC
AACCTCGCCG AGCGCCAGCT CGCGCGGCTC GACGAGTCGG GCATCATCGC GATCGGTGCC
GAGGTCGAGG CGGGCGACGT GCTCGTCGGC AAGGTCACGC CCAAGGGCGA GACTCAGCTC
ACGCCGGAAG AGAAGCTCCT GCGCGCAATC TTCGGCGAGA AGGCGTCCGA CGTGAAGGAC
ACGTCGCTCA AGGTGCCGTC GGGCATGTCC GGCGTCGTCA TCGACGTTCA GGTCTTCACG
CGCGAAGGCA TTGAAAGGGA TAAACGCGCC CAGTCGATCA TCGACACCCA GCTCGCCGAG
TACAAGAAGG ACCTGACCGA CCGCATGCGC ATCGTCGAGG ACGACACCTT CGCGCGCCTC
GAGAAGCTCC TGCATCTCAA GGTCGTGAAC GGCGGACCGA AGAAGCTCGC CAAGGGCAGC
AAGATCAGCA AGGAATATCT CGATTCGCTC AATCGCCACG ACTGGTTCGA CATCCGGCTG
GCCGACGACG AGGCGAGCCG TCAGGTCGAG TCGCTGAAGG ACAGCCTGAC GCAGAAACGC
GTCGAGTTCG ACGCGATGTT CGAGGAGAAG AAGCAAAAGC TGACCGCGGG CGACGAGCTG
CCGCCCGGCG TGCAGAAGAT GGTCAAGGTC TATCTGGCGG TCAAGCGCCG CCTGCAGCCT
GGCGACAAGA TGGCCGGCCG TCACGGCAAC AAGGGTGTCG TGTCGAAGAT CGTTCCGGTC
GAGGACATGC CCTTCATGGC CGACGGCCGC CCGGTCGACA TCGTGTTGAA TCCGCTCGGC
GTGCCGTCGC GGATGAACAT CGGCCAGATT CTCGAGACCC ACCTTGGCTG GGCGTCGAAA
GGGCTCGGCG AAAAGATCGG CCAGATGATG GCCGCGCAGA CTAAATCGGT GGTGAAGGAG
TTGCGGCACT TCTTCAAGGA GGTCTACAAC CAGTCGGGCA AGGCGGAGGA CATCGACAAC
TTTACCGACG ACGAAATCCT CGAGCTCGGC CAGAACCTGC AAAAGGGCGT GCCCTTCGCC
TCGCCCGTGT TCGACGGCGC GACCGAAGAG GAGATTCGCC GCATGCTCGC GCTCGCCGGC
CTGCCCGAGG GCGGCCAGGT CACGCTCTAC GACGGTCGCA CCGGCGAAGC CTTCGACCGT
CAGGTCACCG TCGGCTACAA GCATGTGCTG AAGCTGCACC ACCTGGTCGA CGACAAGATG
CACGCGCGCT CGACCGGCCC GTACTCGCTC GTGACCCAGC AGCCGCTGGG CGGCAAGGCG
CAGTTCGGCG GCCAGCGCTT CGGCGAAATG GAAGTGTGGG CACTCGAGGC CTATGGTGCC
TCCTACGTGC TGCAGGAAAT GCTGACCGTG AAGTCCGACG ACGTGAACGG CCGGACCAAG
GTGTACGAGA ACATCGTCAA GGGCGATCAC AAGATCGAGG CCGGCATGCC CGAGTCCTTC
AACGTGCTGG TGAAGGAAAT CCGAAGCCTG GGCATCGACA TCGATCTGGA ACGTTATTAA
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| Protein sequence | MAYTFTEKKR LRKSFASRTN TLPVPFLLAT QLESYRAFLQ EGRSRDERLN EGLQAAFTSI
FPIESHSKNA RLEYVSYQLG EPVFDIKECQ QRGLTYCAPL RAKVRLVIMD KEASKPTIKE
VKEQEVYMGE IPLMTPTGSF VINGTERVIV SQLHRSPGVF FEHDRGKTHS SGKLLFSARV
IPYRGSWLDF EFDAKDILFF RVDRRRKMPV TILLKALGYT PESILDAFFN KDTFYINTLG
IQFELVPERL RGEIARFDIC GKDDKVIVAK DKRITAKHIR ELDAAGVKKW AVPGEFVVGR
VLAHDVVDKD TGELVARAND EITEELLKKL AAAGIDKFQT LYTNDLDHGA FISQTLRTDD
TTDEYAAKVA IYRMMRPGEP PTEDAVNALF VNLFFSDERY DLSAVGRMKF NRRIGRDELT
GTGTLSTEDI VAVIKILVEL RNGRGEIDDI DHLGNRRVRS VGELAENQFR AGLVRVERAV
RERLSQAESD NLMPHDLINA KPVSAAIKEF FGSSQLSQFM DQTNPLSEIT HKRRVSALGP
GGLTRERAGF EVRDVHPTHY GRVCPIETPE GPNIGLINSL ALFARTNWYG FIETPYRKVV
DNKVTDEIEY LSAIEESKYV IAQANAELDA KGKFKDDLVS CRFKNEFTLS APDRIEYMDV
APAQIVSVAA SLIPFLEHDD ANRALMGSNM QRQAVPCLRP EKPFVGTGIE RTAAVDSGTV
VIAHRGGRVD YVDAGRIVIR VHDEEARAGE VGVDIYSLIK YTRSNQNTNI NQRPLVKVGD
VIARGDVIAD GASTDMGELA LGQNMLVAFM PWNGYNFEDS ILINEKVVAE DRYTSIHIEE
LSVVARDTKL GPEEITRDIS NLAERQLARL DESGIIAIGA EVEAGDVLVG KVTPKGETQL
TPEEKLLRAI FGEKASDVKD TSLKVPSGMS GVVIDVQVFT REGIERDKRA QSIIDTQLAE
YKKDLTDRMR IVEDDTFARL EKLLHLKVVN GGPKKLAKGS KISKEYLDSL NRHDWFDIRL
ADDEASRQVE SLKDSLTQKR VEFDAMFEEK KQKLTAGDEL PPGVQKMVKV YLAVKRRLQP
GDKMAGRHGN KGVVSKIVPV EDMPFMADGR PVDIVLNPLG VPSRMNIGQI LETHLGWASK
GLGEKIGQMM AAQTKSVVKE LRHFFKEVYN QSGKAEDIDN FTDDEILELG QNLQKGVPFA
SPVFDGATEE EIRRMLALAG LPEGGQVTLY DGRTGEAFDR QVTVGYKHVL KLHHLVDDKM
HARSTGPYSL VTQQPLGGKA QFGGQRFGEM EVWALEAYGA SYVLQEMLTV KSDDVNGRTK
VYENIVKGDH KIEAGMPESF NVLVKEIRSL GIDIDLERY
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