| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0122 |
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| Symbol | ddl |
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| ID | 3673901 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 130908 |
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| End bp | 131840 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637708782 |
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| Product | D-alanine--D-alanine ligase |
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| Protein accession | YP_313880 |
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| Protein GI | 74316140 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
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| TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.000652321 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.029871 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAGCGAAA CGGTTTCAGC GAAAAAATTC GGCAAGGTCG CCGTGATGCT CGGCGGCACC
TCGGCCGAGC GGCCGGTATC CCTGAACAGC GGCAATGCGG TGCTCGCGGC GTTGACGCGC
CAGGGCATCG ACGCGCACGC GTTCGACCCG GCGACACGCA GCCTCGGCGA CCTCATGAGC
GGCGAGTTCG ATCGTGTGTT CATCGCGCTG CACGGGCGCT ACGGCGAAGA CGGCTGCATG
CAGGGCGCCC TCGAACTGCT CGGCATTCCC TATACCGGCA GCGGGGTGAT GGCCTCGGCG
GTCGGCATGG ACAAGTGGCG CACCAAGCTG CTGTGGCGTG CGGCCGGCCT GCCGACCGCG
GACTGGGCCA TGCTCGACGC GACGAGCGAT TTCGCCGCGA CCGAGGCCAG GCTCGGGCTG
CCGATCTTCG TGAAGCCGGC GCGCGAGGGT TCGAGCATCG GCATGAGCAA GGTGACCGAG
GCCGGAACGT TGCAGGCCGC CTACGAGAAG GCCGCCGAGC ACGACGCGCT CGTGCTCGCG
GAAAAATTCA TCGACGGCGC CGAATTCACG GTCGGCATCG TCGGCGACAG CGCGCTGCCG
CTGATCCGTC TGCAACCGGC AGCCGAAAAG GCGTTTTACG ATTTCGAGGC GAAATACCTG
CGCGACGACA CCCAGTACCA CTGCCCGGCC GGCCTCCCCG ACGCCCAGGA GATGAGCCTG
CGCAAACTCG CGCTCGACGC CTTCCGCCTG CTCGGCGGCC GCGGCTGGGG CCGTGTCGAC
CTCATGACCG ATCGCCTCGG CAATCCCTAT CTGCTGGAAG TGAACACCTC GCCCGGCATG
ACCGACCACA GCCTCGTTCC GATGGCCGCG CGCGTCGCCG GCATCGACTT CGACGCGCTT
TGCGTCACGA TCCTGGAGCA GACGCTCGGA TGA
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| Protein sequence | MSETVSAKKF GKVAVMLGGT SAERPVSLNS GNAVLAALTR QGIDAHAFDP ATRSLGDLMS
GEFDRVFIAL HGRYGEDGCM QGALELLGIP YTGSGVMASA VGMDKWRTKL LWRAAGLPTA
DWAMLDATSD FAATEARLGL PIFVKPAREG SSIGMSKVTE AGTLQAAYEK AAEHDALVLA
EKFIDGAEFT VGIVGDSALP LIRLQPAAEK AFYDFEAKYL RDDTQYHCPA GLPDAQEMSL
RKLALDAFRL LGGRGWGRVD LMTDRLGNPY LLEVNTSPGM TDHSLVPMAA RVAGIDFDAL
CVTILEQTLG
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