| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0101 |
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| Symbol | |
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| ID | 3673879 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 108358 |
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| End bp | 109824 |
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| Gene Length | 1467 bp |
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| Protein Length | 488 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637708761 |
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| Product | D-alanyl-D-alanine carboxypeptidase PBP3 |
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| Protein accession | YP_313859 |
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| Protein GI | 74316119 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2027] D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4) |
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| TIGRFAM ID | [TIGR00666] D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.841791 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0973184 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGGCC GAATTCGGCA TAATGCTGTG ATGCCGTCGC GCCGCGTTTT CCCTCTGCTG
ATCGGCCTGC TGCTTGCAGG GGCCTTCTCC TCCGTCCCCG CCGCGGAGTT GCCCGAGGGC
TTCGTCGCTG CGCTCGACAC GGCCGGGATT CCGCGCGAGC GCGTCGCCGT CGTCGTGCAG
AAGCTCGACG CCGAACAGCC GCTGCTCAGC CACAACGCCG AGGCTGCGCT CAATCCCGCT
TCGGTGATGA AACTCGTGAC GAGCTTTGCG GCGCTCGACC AGCTCGGCCC GGGCTACCGC
TGGACGACCG AGCTGTGGCT GGACGGCCCG GTCGCGCACG GGGTTCTCGG CGGCGATCTC
GTCGTCAAGG GGCGCGGCGA CCCGACGCTC ACGCTCGAGC GCATGTGGTT GCTGCAGCGC
GCACTGCGCG CACGCGGGGT GTCGCAGGTT CGCGGGCGGC TCGTGCTCGA TACGGGCTAT
TTCGTTCTTC CCGAACTCGA TCCCGGTGCG TTCGACGGCG AACCGCTGGC CTTGTACAAC
GCGCTACCGG GGCCGCTGGT GGCGAACTTC AACGCCATCA CGGTGCATCT GCGGCCAAAC
GGCGAGACGG TGCGCGTCGT TCCGGACGTT GCCCTGCCCG GCGTCGATCT GAGTTCGGAA
CTTGTGCTGA GCGACGAGGC CGGGTGCGAC GGCTGGAGCG ACGGCATCGA GCCGCGCTTT
ACCGTCGAGG GCGGGCGGGC CCTCGTTTTT GGCGGGCGCT ACGCCGCCGC GTGCGGCGAG
CGGTCGCTGT CGCTGAATCT GTTCGAACCG GCGACGACCT TCGATTTTAT GTTTCGCGGG
CTCTGGGCCG AGTCGGGCGG GCGCATCGAC GGCGCGACGG TCTTCGGCGC GGTACCGGCC
TCGGCGCCCG CGCTGCGCTT CGCGTCGGAA CCGCTGACCG AGGCGCTCGT CCGCCTCAAC
AAGTATTCCA ACAACCTGAT GACGCGCAAC CTCTTCCTGA CCCTCGGCGC CGAGGCCTAC
GGCCCCCCGG CCACGCCGGA AAAAGCCGCC GACGCGGTGC GCGCGTCGCT GACGCGCCGC
GGCATATCGA CGCGCAAGCT GGTGATCGAG AACGGCGCAG GGCTGTCACG GATCGAACGC
CTGAGTGCAG CGGCGCTGAC CCAGTTGTTG CGCGCCGCCT ATCGCAGCCC GCTGTTCGCC
GAATTCGAGT CGGCGCTGCC GATCGTCGCG ATCGACGGTA CGCTCAAGCG CCGTTTCAAC
GGCAGCCCAC TGGCGGGCAA CGCGCACCTG AAGACCGGCA CGCTGCGCGA CGTGAGTGCG
CTCGCGGGCT ACGTCGTCGA CGTGCGCGGC GAACGCTGGA GCTTCGTCAT GCTCGTCAAC
CACGCCCAAG CGCGCCGCAG CGAGGCCGCG CAGCGCGCTT TGCTCGAGTG GGTGCAGTCG
GATGCCGCCG GCGCGGTAGT GCCCTGA
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| Protein sequence | MAGRIRHNAV MPSRRVFPLL IGLLLAGAFS SVPAAELPEG FVAALDTAGI PRERVAVVVQ
KLDAEQPLLS HNAEAALNPA SVMKLVTSFA ALDQLGPGYR WTTELWLDGP VAHGVLGGDL
VVKGRGDPTL TLERMWLLQR ALRARGVSQV RGRLVLDTGY FVLPELDPGA FDGEPLALYN
ALPGPLVANF NAITVHLRPN GETVRVVPDV ALPGVDLSSE LVLSDEAGCD GWSDGIEPRF
TVEGGRALVF GGRYAAACGE RSLSLNLFEP ATTFDFMFRG LWAESGGRID GATVFGAVPA
SAPALRFASE PLTEALVRLN KYSNNLMTRN LFLTLGAEAY GPPATPEKAA DAVRASLTRR
GISTRKLVIE NGAGLSRIER LSAAALTQLL RAAYRSPLFA EFESALPIVA IDGTLKRRFN
GSPLAGNAHL KTGTLRDVSA LAGYVVDVRG ERWSFVMLVN HAQARRSEAA QRALLEWVQS
DAAGAVVP
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