| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0033 |
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| Symbol | |
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| ID | 3673834 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 32000 |
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| End bp | 35269 |
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| Gene Length | 3270 bp |
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| Protein Length | 1089 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637708692 |
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| Product | DNA helicase/exodeoxyribonuclease V, subunit A |
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| Protein accession | YP_313791 |
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| Protein GI | 74316051 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.115384 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGAAG CGCTCGACGC CGCCATCGCG CTCTCGCCCA ACCGTTCGGC GGTCGTCGAA
GCCTGCGCCG GCAGCGGCAA GACCTGGCTT CTCGTGTCGC GCATGCTGCG CCTGCTGCTC
GCCGGCGCGG CGCCGTCGGA ACTGCTCGCG ATCACCTTCA CGCGCAAGGC GGCGCAGGAA
ATGACCGATC GCCTGCACGA ATGGCTGCGC GTGCTGGCGC TCGCGGACGA CGCGACCGTG
CGCGCTTTTT TGCGCGAACG CGAGGTGCCG GCCGACGAGA TCGACGCGCT GCTGCCACGC
GCGCGCGGAC TGCTCGAAGC GGTACTGAGC GCGCAGCCCG GGCCGACGGT GACGACGTTT
CACGGCTGGT TTCTCGACCT CCTCAAGCGC GCGCCGCTCG AGGCCGGCCT GCCCTGGGGC
GCGCCGCTGC TCGAACGCGA AAGCGAGTTG CTGAACGAGG TGCGCGAGCG CCTGTTCGCG
CGCTGGGCGG CCGCGCCTGC CTCGCCGGAG GGCGCAGCGC TGCTCGCGCT GCTCGCTTCG
CTCGGCGAGC ACAATCTGCG CGCGCTGCTG CGCAATTTCA TCGCCGCGCG CATCGAATGG
CAGGCCTTCG CGCGCGATCA GGCCGACCCG GTCGGCTATG CGCTCGGAGA ATTGCAGCAT
TGCCTGCAGA GCGAGCTCGA CGCCGATCCG GTCGCGGCGT TCTGGGCCGA TCCGGCGCTG
CGCGCACGCG TCGGGCGGCT CGGCGAGGCG CTCGAGAAAG GCAGCGAGAC TGAGCGCAAG
AAGGCGCTGG CCATCCGTGA AGCGATCGAC GCCGCCGACG TCGTGCAGCT GCGCGGACTG
ATCCTGAAGA AGGACGGCGA ACGTCTGGCC AAAAAAGCGA ATGCATCGAC ACTCGCCGCG
CTCGGCGCCG AGGCCGACAC GTTCTTGCGC GACTACGCCA GCGTCGAGGA CGCGCTCGAA
GCGCTCGCCC GCCACCAGAC GGACTTGCGC ATCCGGGAGC TCAATCGCCA TGGCCTGCTG
CTCGGCCATG CCCTGTTCAC GGCTTATCAG GATGCGAAGC GACGGCAGGG CGTGATCGAC
TTCGCCGACG CGGAGTGGCT CGGCTGTCAG CTGCTCATGA GCGAGGAATA CGCGCCGGCG
CTGGCGATGA AGCTCGACGC GCGCTACCGC CATCTGCTGC TCGACGAATT CCAGGACACC
AATCCGCTGC AATGGCAGGC GCTCTCGACC TGGCTGCTCG AAGCGCGCGG CGGCGGGAGC
GAAATGACGG TCTTCATGGT CGGCGACCCG AAACAGGCGA TCTACCGGTT TCGCCGCGGC
GAGGCACGCG TCTTCGACGC GGCGACGGAC TTTCTGCACA GTCATTTCGA AGCCGCCCGC
TTCAGCACCG ACATGACGCG GCGGCTCGCG CCGCCTGTCG TCGCCGCCCT AAACCCCGTG
TTCGCCGGCG TCACGGGCTT CGCGGAACAT CGGCACGCGC CGCAAAACGC CGAGCGCCCG
GGCGCGCTGC GCGTACTGCC GCTGCAGGTC GAGAAAACCG AGCCGGTCAC CGCAGGGGGA
TTGCGCAATC CCTTGACGAC AGCGCGGACC GAGGCCGAGG ACCGCGTCGT CGACGAAGAG
GCCCGCGTAT TCGCCCGTAC CCTGCGTGAC GAGATCCTCG GCCGCTGGGG CGTCATCGAC
AAGGGCACGT CGCGGGCCGC GGCGCCGCGC GACGTCATCG CACTGGTCAA GAAGCGCACC
CACCTGCACG TCTACGAACG CGAACTGGAG GCTGCGCGCA TCCCCTACAT CACCTCGCGC
CGCGGCGGCT TGTTGAACGC GCTCGAGGCA CGCGACCTCG TCGCGCTCAT CGAATGCCTG
CTGCTGCCGC ACGCCGACCT CAAGCTCGCA CACGTGCTGA AGAGCCCGAT CTTCGACTGC
AGCGACGACG ACCTGCTGAG CGTGTTCGCC CCGCAGCCTG ACGCCGGTGC GCGCGGCTGG
GAACGCCTGC TGGCGCTCGC CGAGGCGCCC CACGCCACGG CAGAAGCCGC CCGCGCGGCG
CGGCTTCTGC CGCGCTGGCG CGAACGCTGC GGCACGCTGC CGGTGCACGA CCTGCTCGAC
CACATCTATT GCGAAGGGGA CGTCGAAGCA CGCTACGCCG CCGCGGTGCC GCCGGCACGG
CGGCCCCAGG TCGAAGCCAA CCTGCGCGCC TTCATGCAAC TGGCCCTGAC CCAGGACGCC
GGCCGCTATC CGACGCTCGC CGGCTTCGTG CGCGAGCTCG CGTCGCTCAT CGACGACGCC
GACGCGTCGC CCGACGAAGG CCTCGCGGCC GACGGCGCCG ACGCGGTCAG GCTCCTGACC
ATCCACGGCG CGAAGGGCCT CGAGGCGCCC ATCGTCTGGC TGCTCGGCGG CAGCGACCGT
CCGCACGGCG AAAGCTACGG CGTGCTCGCG CCGTGGCCGC CGGACGCGCC GGCGCCGCTG
CATTTTTCGC TGTTCGGCAA ACAGGACGAG CGCGGCGCGG GCAGACAGGG CTCGTTCGAC
GAGGAGAAGA CGCTCGCCGA ACGCGAAGCG GACAATCTGC TTTACGTCGC GCTCACGCGC
GCCGAACAGG CCCTGATCGT CAGCGGCGAC GCCGGCAAGA ACGCCTGGGT CCAGCGCGTC
GAAGCGGCCT GGCACGCGCT CGACCTGCCG GCGGACCTGC CCGTCGCCGC CGAGGCAGGG
ACGCACAACA TCGAGCTGCG GACCCCGATC GAAGCGCCGC CGATCGGCCG CCGTGTCGCC
TCGCCGGGGC ACAACGCGGC GGCGGCGAGC GGGGAATTTT TCCACGCCTG TCTCGAGGTC
CACGCACCGC CCGGCGCGCC GCGCAAGCTC GCCGAACTCG CGATGCATCT CGGGCTCGAG
CGCGAACACG CGCGGATCGA AGCCGAGGCA CGCGCCCTCC TCGCGCGGCC GGAACTCGCG
CATCTGTTCG ACCCGGCACG CTATCGGCGC GCATACAACG AGCTCGCGCT GCTCGACCGC
GACGGGCGCT TGCAGCGCGC CGACCGCGTC GTCGAGGGCG AGGACGCGGT CTGGCTCGTC
GACTACAAGA TGGGCGAGCA GAGCCGTTTG CTGTCCGACA CCGCGCTCGC CGAGGCGCAT
CGCGCGCAAC TCGCCGGTTA TCGGTCCTTG CTCGCCGCGC TCTATCCGCA CAAACCGGTC
CATGCCGTGC TGCTGCTCGC CGACGGCCGC CTGGTCGAGG TCGACACCGA CGTCGCCAAC
CCGCTTTCCT TCCTGGAGCC ACGCCCGTGA
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| Protein sequence | MREALDAAIA LSPNRSAVVE ACAGSGKTWL LVSRMLRLLL AGAAPSELLA ITFTRKAAQE
MTDRLHEWLR VLALADDATV RAFLREREVP ADEIDALLPR ARGLLEAVLS AQPGPTVTTF
HGWFLDLLKR APLEAGLPWG APLLERESEL LNEVRERLFA RWAAAPASPE GAALLALLAS
LGEHNLRALL RNFIAARIEW QAFARDQADP VGYALGELQH CLQSELDADP VAAFWADPAL
RARVGRLGEA LEKGSETERK KALAIREAID AADVVQLRGL ILKKDGERLA KKANASTLAA
LGAEADTFLR DYASVEDALE ALARHQTDLR IRELNRHGLL LGHALFTAYQ DAKRRQGVID
FADAEWLGCQ LLMSEEYAPA LAMKLDARYR HLLLDEFQDT NPLQWQALST WLLEARGGGS
EMTVFMVGDP KQAIYRFRRG EARVFDAATD FLHSHFEAAR FSTDMTRRLA PPVVAALNPV
FAGVTGFAEH RHAPQNAERP GALRVLPLQV EKTEPVTAGG LRNPLTTART EAEDRVVDEE
ARVFARTLRD EILGRWGVID KGTSRAAAPR DVIALVKKRT HLHVYERELE AARIPYITSR
RGGLLNALEA RDLVALIECL LLPHADLKLA HVLKSPIFDC SDDDLLSVFA PQPDAGARGW
ERLLALAEAP HATAEAARAA RLLPRWRERC GTLPVHDLLD HIYCEGDVEA RYAAAVPPAR
RPQVEANLRA FMQLALTQDA GRYPTLAGFV RELASLIDDA DASPDEGLAA DGADAVRLLT
IHGAKGLEAP IVWLLGGSDR PHGESYGVLA PWPPDAPAPL HFSLFGKQDE RGAGRQGSFD
EEKTLAEREA DNLLYVALTR AEQALIVSGD AGKNAWVQRV EAAWHALDLP ADLPVAAEAG
THNIELRTPI EAPPIGRRVA SPGHNAAAAS GEFFHACLEV HAPPGAPRKL AELAMHLGLE
REHARIEAEA RALLARPELA HLFDPARYRR AYNELALLDR DGRLQRADRV VEGEDAVWLV
DYKMGEQSRL LSDTALAEAH RAQLAGYRSL LAALYPHKPV HAVLLLADGR LVEVDTDVAN
PLSFLEPRP
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