Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3870 |
Symbol | |
ID | 4074933 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008042 |
Strand | + |
Start bp | 124211 |
End bp | 125185 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 638004527 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_611262 |
Protein GI | 99078003 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 44 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.427037 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCAAGA CGTTTACCAC CGCACTGTCT GCGCTGGCAC TGACCGCGTC GGTTGGCGCG ACAGGCGCAA CCACCTTGAA ACTTAACCAC AATAACCCGC CAGATCATCC GGTCCACATC TCAATGCAGA TTATGGCAGA CCGTGTGGCA GAGCTGACCG ACGGCGAAAT CAAGATCCAA ATCTTCCCCA ATGCCCAGCT CGGCACTCAA CGGGAATCGA TGGAACTGGT CCAAAACTGC GCTTTGGAGA TGGCACGCTC CAATGCGTCC GAACTCGAAG CATTCGAGGA AAGCTATTCG GCGCTCAATC TGCCTTACAT CTTCTCGTCC GAAGAGCATT TCAACACGGT GATCACCGGC GACATCGGCC AGGATATCCT GAATTCTTCT GTCGATCAGG GTTTTCGCGG GGTCGCGTTC TATACCGAGG GTGCGCGTTC CTTTTATGCG CAAAAGCCGA TCATGTCCCC GGCAGACTTG CAGGGCGTAA AAGTGCGTGT TCAGCCAAGC CCCTCTGCCA TTCGCATGGT CGAACTTTTG GGCGGCAACC CGACACCGAT TTCCTGGGGT GAGCTTTATA GCGCGCTGCA GCAGGGCGTT GTGGATGCGG CAGAAAACAA CCCAACCGCA CTGACCACCG CACGCCATGG CGAAGTAGTC AGCGATTTTT CCTTGGATGA GCACACTATG ATCCCCTCGG TTGTTGTGAT CTCCAACTGC GCATGGGACG GTATGACTGC CGAACAGCAA AAGGCCCTGC AAACTGCTGC ACTCGACTCC ATGGCCGCGC ACCGCAAGGC GTGGAACGCA GCCTCCGACG CGGCGATTGA GGAAGCGAAA ACCACGCTGA ACGTCAATGT CCACATGGTC GACAAAGCGC CTTTCGCTGA GGCTGTCTTG CCAATGCATG AGGAAGTGGC GGCGAAATCC GAGCACCTTG CCGATCTGAT CGATCGCATC AAAGCAGCCC AATAA
|
Protein sequence | MTKTFTTALS ALALTASVGA TGATTLKLNH NNPPDHPVHI SMQIMADRVA ELTDGEIKIQ IFPNAQLGTQ RESMELVQNC ALEMARSNAS ELEAFEESYS ALNLPYIFSS EEHFNTVITG DIGQDILNSS VDQGFRGVAF YTEGARSFYA QKPIMSPADL QGVKVRVQPS PSAIRMVELL GGNPTPISWG ELYSALQQGV VDAAENNPTA LTTARHGEVV SDFSLDEHTM IPSVVVISNC AWDGMTAEQQ KALQTAALDS MAAHRKAWNA ASDAAIEEAK TTLNVNVHMV DKAPFAEAVL PMHEEVAAKS EHLADLIDRI KAAQ
|
| |