| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3822 |
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| Symbol | |
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| ID | 4074973 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008042 |
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| Strand | - |
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| Start bp | 71140 |
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| End bp | 71754 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004481 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_611216 |
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| Protein GI | 99077957 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 43 |
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| Plasmid unclonability p-value | 0.539253 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0346403 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGCTGG TCATGGAGAG CGATGGCTCT CTGACCCCGT CCCGCTCCCA GGACAGCTTT
GCCCGCAACT ACAATGACGG GATCGGCCAG GAGTCCGCGG CTGATGAGCT GGCGATCCTC
GGTGAGACTG ACCTTGGGCC AGACGAAATC CAATTGGCAG CCCTTGCGCG GCCCGTTCCC
CTGCCCCGCG CCGATGTTCT CACGGCTATC GAAACCACCG CCCTGCGCTA TGCCGGACAT
CCTGGGCTGC GCCGCGCGGG GCTTTCCGTG ACCGATTGGC TGGCTCTCTA TCGGGCTAAT
ATCGAGGTTG AGAGCGCCTA TCGACAGGAT GCGATCTCGA GCGCGGGCGC TATAGGCCTT
GGTCAATTGA TGCCCGCGAC GGCGCGCGAT CTGGGTGTTG ACCCGCGTGA TCCACTTCAG
AACCTCGATG GTTCCGCCCG CTATCTTGCA ATGATGCTGC AGTCGTTCAG CGATCCGCGT
CTTGCCCTCG CAGCCTACAA CGCCGGACCC GAAGCTGTGC ACCACTACGG CAGCATTCCC
CCCTACCGAG AAACCCAGAA CCACTTGACC CGTGTCATGA CAGTTGTGGC CCGATTGAAA
GCACCAAATT CATGA
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| Protein sequence | MVLVMESDGS LTPSRSQDSF ARNYNDGIGQ ESAADELAIL GETDLGPDEI QLAALARPVP
LPRADVLTAI ETTALRYAGH PGLRRAGLSV TDWLALYRAN IEVESAYRQD AISSAGAIGL
GQLMPATARD LGVDPRDPLQ NLDGSARYLA MMLQSFSDPR LALAAYNAGP EAVHHYGSIP
PYRETQNHLT RVMTVVARLK APNS
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