Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3819 |
Symbol | |
ID | 4074970 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008042 |
Strand | - |
Start bp | 68214 |
End bp | 70589 |
Gene Length | 2376 bp |
Protein Length | 791 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638004478 |
Product | CagE, TrbE, VirB component of type IV transporter system |
Protein accession | YP_611213 |
Protein GI | 99077954 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.321786 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.020067 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCCGTG ATGACGCCCG TAAAGATGCG CTCGATCTCC GCACGATGAC ACCGGACTGG TATAGCCGCG AAACCCGCCT CGCGCATATG CTGCCCTATG TGAGCTTAGT TGATGACCAG ACCGTGCGGA CCCGGGTCAA CGAGCTTTTC CAGTGCATCC GGTTCGATGG GGTCAACAGC TACACCACAG ATGATACCTA TCTCGACAAG GTGACCGCGC TCTTTGCTCG GATCATCGCG CAGCTGGGGC CGGAATTCAG CTACTACGTC CACAAGGTCT CAAAGGCGAT CAAACCGGAT CTGGACCCAA TTCGTAAGGA CAGCTTTGCT GGAGAAGTTG ACCGTCTCTG GCGCAAGAAA CTGGAGACCA GCGGCCTGCG CGACAAGACC CTGACCCTCA CCATCATTCA CCGCCCACCC CCCAAAAGCG TCCTGCCCTT CTTGAACCGC AGCGCTCCGA ACCGGCTGAA GAAGGCAACT GAGAAACGCC TGCGCCGATT AGGCGAGGCC GTGAACGTAT TCCTGTCAGG CTTGAGCGAG CTGAACCCGC GCATTCTCTC TGCTGAGACT GGCGAGTTGA TCGGCTTTCT GGGGGCTCTC AATACTGGCC AGGAACTGCC GCTCTATCCG GCGAACACCT ATGGCTTCCT GTCCTTCAAC GCCGCCAACA CGCGAGTGAC GTTTCAAGGC GATCACTTCG AGCTCTCCGA AGGCGTCGTG GGACACCGCT ACGGCAAGAG TTTCACCATC GGGGAATACT CGGAAGGCAC CTCCTGCACC ATGTTCGACA TGCTGAACCT GCCGGTCGAC ATGATCGTCA CGCATTCCTT CACGCCGATC AATTCGAACC TCATGGCCGG TCGGATCAAG CGCCAGAAGC GCCAGATGCA GGCCAGCCAG GACGCGGCCC TCTCGCTGAT GGAAGCCCTC GACATCGCCG CCGATGATCT CGAGGCCAAG CGCCAGAGCT TTGGTGAGCA CCACATGGTG GTGACAATCT TCTGCGATAC GCTCGACGAG CTGCAGACGC TGAGCGCCGA GATCGTCAAC GCCGCCGCCG CCGAAGGTGT TAAGATGATC GGCGAGCGGG TCGCCGCCAA GGCGCATTAC CTGAGCCAGC ATCCGGGCAA CCAACCGAAA CGCGTGCGCG CCAGTGCGAT CACCAATCGC AACTTCGCAG ATTTCGCGGC GTTCCATCGG ACCCAGCTCG GCAAGCCGGC AGGGAAAACA CCCTGGGGCA AGGTCATCAC CTATCTGCCC ACACCCGAAC AAAGCGCCTA CCGGTTTTCC TATCACGAAC AGGGTAGCCC CGAAAAAGAG CCGACCAGCG GGCATACGCT CATCATGGGA CGGCCCGGGT CGGGCAAGTC GGTGCTCTCG GCATTCCTCA TGACGCAGGC CCGTCGAGCA GGGGCGCGGA TCTTCGTCTT CGATTACCGT CTCGGTATGG AGATGGCGGT CCGCGCCAAT GGCGGGCGCT ACGCATCGCT TAAAGCCGGG CAGCCCACGG GCCTCAACCC GCTCTGGACC GAGACCGATG CACGCGGCAC CGCCTGGCTG TCGGACTGGC TCGCCACGCT GCTTTATCGC GCCGACAAGC CCCTCACACC CGCGCAGACC AACCGCATCC AGGAAGTTGT GCGCCAGAAC GCGCAGGCCA CGAATCCGGC CTTGCGGAAC TGGCGGGATT TCGCGTCGCT TTTTGTGTCC ACCGATGATG GCGGCGATTT GCACCAGCGC CTGCTCGAGT GGACCGAAGA GGGCCGCTAC GGCTGGATTT TCGGGCAAAC TCTGGAAGAC ACCTTCTCGC TCGAAGGCGA TGTGGTAGGC TTCGATCTTA CCGGCATTCT CGACAGTGAG GCCGAGAAGG AACGCATGGC GGTCCTCTCC TATCTCTTCC GCCGGGTCGA GCGGGAGATC GAAGACCGCC GTCCCACCAT CATCGTGATC GACGAGGCGT GGAAGGCGCT CGACAACGCG TATTTCGCAG AGCGGCTGTC TAACTGGCTC GTGACCGCGC GCAAGCAGAA CACCGTCGCG GTGATGATGA CGCAATACGC CAGCCAGCTC GAGCGCACCC GGACCGGCAA GACCATCGTC GAGGCGGTGC CCACGCAAAT CCTGCTCCCA AACATCCGCG CCCATGCCGC CGATTACGCG ATGCTGAACC TCTATGAGAA GGAGCTCGAC GTTCTTCTCA ACACCGGCAG CGACAGCCGC CTTGCGCTCA TCCGCGACGA CCAGGGATCC ATCGTCGTCG ATGCCGATCT GAGCGCCCTC GGACCCAATC TCACCATCCT CGGCGGCATG GAAACAGGCG AGGCCCTCGT CGGTTCCGAT TACCGCAACC GCCCGGACTT CTGGAGGCTT TCATGA
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Protein sequence | MPRDDARKDA LDLRTMTPDW YSRETRLAHM LPYVSLVDDQ TVRTRVNELF QCIRFDGVNS YTTDDTYLDK VTALFARIIA QLGPEFSYYV HKVSKAIKPD LDPIRKDSFA GEVDRLWRKK LETSGLRDKT LTLTIIHRPP PKSVLPFLNR SAPNRLKKAT EKRLRRLGEA VNVFLSGLSE LNPRILSAET GELIGFLGAL NTGQELPLYP ANTYGFLSFN AANTRVTFQG DHFELSEGVV GHRYGKSFTI GEYSEGTSCT MFDMLNLPVD MIVTHSFTPI NSNLMAGRIK RQKRQMQASQ DAALSLMEAL DIAADDLEAK RQSFGEHHMV VTIFCDTLDE LQTLSAEIVN AAAAEGVKMI GERVAAKAHY LSQHPGNQPK RVRASAITNR NFADFAAFHR TQLGKPAGKT PWGKVITYLP TPEQSAYRFS YHEQGSPEKE PTSGHTLIMG RPGSGKSVLS AFLMTQARRA GARIFVFDYR LGMEMAVRAN GGRYASLKAG QPTGLNPLWT ETDARGTAWL SDWLATLLYR ADKPLTPAQT NRIQEVVRQN AQATNPALRN WRDFASLFVS TDDGGDLHQR LLEWTEEGRY GWIFGQTLED TFSLEGDVVG FDLTGILDSE AEKERMAVLS YLFRRVEREI EDRRPTIIVI DEAWKALDNA YFAERLSNWL VTARKQNTVA VMMTQYASQL ERTRTGKTIV EAVPTQILLP NIRAHAADYA MLNLYEKELD VLLNTGSDSR LALIRDDQGS IVVDADLSAL GPNLTILGGM ETGEALVGSD YRNRPDFWRL S
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