Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3795 |
Symbol | |
ID | 4074889 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008042 |
Strand | - |
Start bp | 45670 |
End bp | 47667 |
Gene Length | 1998 bp |
Protein Length | 665 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638004454 |
Product | periplasmic sensor signal transduction histidine kinase |
Protein accession | YP_611189 |
Protein GI | 99077930 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.15018 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTCGTG TGCAGCACAA ACTCGGCTTC ACAGACCTCT TGGTCGCTCT GTCAACGGCA CTCTGGTTTA TCCCCACATA TATCGCTGCC GAACCTCTAA AAGTCGCGTA TACTGAGTTT CCCCCTTATA GTTTTACCAA CGAAGCGGGG GCGGCTGACG GTTTCTCGAT CGACGTCATC CGGCGCGTTT TAGAAACAGC CGGTCATCAG CCTGAGTTTG TGCATTCCAC CAATCCCGGA CACACTTTGG AATTGCTGTC CTCCGGCGGG GCTGACCTGA GTACATTTAT GGTAACAACC CCTGCGCGAC TGGAGGAAGT CCTTGCAACG CAAGAGGTTG GCAGTATCAA GCTGGCCGCA TTCACTCTGA GGACAAGTGG GTTTGCCCGT AGCGAAGACT TGGCAGGAAA GCGCATTGGT GTTGTGAAAG GCAGCGCCTC AACCTCAGCG GCCAGGATGA TCCCTTTCGC TGAAATCGTA GAATTTCAGC AGACAGACGA TTTGATCGTT CCGCTTTTGC TTGGTGAGGT CGATGCGGTG GTGTCTGGGC AAGAGGCGTT TACGGCCCGA CTACGAGAGG CAAATGTTTT TGGCAAAATC ATCACCTTGG AGCCAAGCCT CGTCTCGATG CCCTATGCAA TATTGGTTTC CGAGACGCAC GCGGATCTTT TGCCCAACTT AAATCAAGCC TTGGATCGGT CTTTATCGCC TGCCACGATC AAAGCCCTCA GGGAAAGTTG GTTCGGGCGC GATACCTACC TCTATGAGAA GCCCGCCTTC TGGTTCGTAG CGATCGCCAT TGCGCTGTTC ACGGCGGTGA CCGGCTATTT AGGAGTACGT GTTCTTCGCT ATAAACGCGA AGCGGCACGC GCACTCCGGG CCAACCAGGC AAACGACCTA CTCGTCAACG CGTTGGATGA GCTCAACGCT GCGATCGTAA TCTATGACCA AAACATGCGC GCCGTGCATC GGAATGCTGG TTTCGCAAAG AGCTTTCCTC GTCTCGTACC ACAGGTCGAC GCAGGCGCAA CGATGGCTGA CCTGATCGGT GTGTCTTACA AAGCGGCAGT TGTTGAATTC GGCGTGAATG ACAAGTCGAT TGATGAATTT GTTTCAGATG TGATCGCCTC TGTAGAGGCA GGGATGGACA ACAGGCGGCT GGTCAAGGCT AAGAATGGCT TGGTTTATGA AGCGCGCGAT TTCCGACTTG GCGCGGATCA CTATGCGTCG ATCAGGGTCG ACGTGACCGC CCAAGCAGCC CTGCAGGAGA CTATCGTGCA ACAGGCCGAA GAACTAAAGC TTGTCAACGC GCGGTTGGAA TCTTTTGCCG CGATTGCAGC ACATGACTTA CGGAGTCCAC TTTCGAGAAT TGCGCCTCTG GTCGAGTTCA TCATTGAAGA CCTCGACGAG GCAAAAATTC AGGTTCCACA GCAGGTCGAA GAGTACTTGG GGTTGTTGAC GCAACAAGCC GATGCGATGA GCACATTGGT TGAAGACCTG CTCACATATG CTTCGGCTGG AACGCAAAAT GGGCGACCTG AAAGTTTTGA TCCCTGTGAT CGCCTCGCAA ACGTTTTGAA AATTATCGAG CCCCCAGAAG GATTCACGAT TAAGACGCCT CAGGCAATGC CCCAGATTTT TGCAGATCCC ATCGCCTTCG AAACAGTGAT GCGGAACTTA ATCAGCAACG CACTAAAGCA TCACGGCAAG GGAGTTGGGA CCGTTGAGGT TTTTGCGACG GAAAACCTCG GCCATGTCCA AATTCACGTG TCCGATGACG GTGTTGGTAT CCCCGAGAAA TATCAAAATA CTGTATTTGA GCCGTTCAAA AGACTGTCGT CTACAGTCTC AGGAAGTGGC CTGGGCCTCG CCTTTGTTCA GAAGACGGTT GAGAGCTGGG GCGGAAGTAT TTCGCTTTCG TCTTCACCAG GTGAGGGGTG TACATTCTCT ATAACAGTTC CTCGTGGTCA GCAGGTTGAG CATATTCTTG CATCTTAG
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Protein sequence | MPRVQHKLGF TDLLVALSTA LWFIPTYIAA EPLKVAYTEF PPYSFTNEAG AADGFSIDVI RRVLETAGHQ PEFVHSTNPG HTLELLSSGG ADLSTFMVTT PARLEEVLAT QEVGSIKLAA FTLRTSGFAR SEDLAGKRIG VVKGSASTSA ARMIPFAEIV EFQQTDDLIV PLLLGEVDAV VSGQEAFTAR LREANVFGKI ITLEPSLVSM PYAILVSETH ADLLPNLNQA LDRSLSPATI KALRESWFGR DTYLYEKPAF WFVAIAIALF TAVTGYLGVR VLRYKREAAR ALRANQANDL LVNALDELNA AIVIYDQNMR AVHRNAGFAK SFPRLVPQVD AGATMADLIG VSYKAAVVEF GVNDKSIDEF VSDVIASVEA GMDNRRLVKA KNGLVYEARD FRLGADHYAS IRVDVTAQAA LQETIVQQAE ELKLVNARLE SFAAIAAHDL RSPLSRIAPL VEFIIEDLDE AKIQVPQQVE EYLGLLTQQA DAMSTLVEDL LTYASAGTQN GRPESFDPCD RLANVLKIIE PPEGFTIKTP QAMPQIFADP IAFETVMRNL ISNALKHHGK GVGTVEVFAT ENLGHVQIHV SDDGVGIPEK YQNTVFEPFK RLSSTVSGSG LGLAFVQKTV ESWGGSISLS SSPGEGCTFS ITVPRGQQVE HILAS
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