| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3746 |
|---|
| Symbol | |
|---|
| ID | 4075453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 805045 |
|---|
| End bp | 805500 |
|---|
| Gene Length | 456 bp |
|---|
| Protein Length | 151 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638005266 |
|---|
| Product | MerR family transcriptional regulator |
|---|
| Protein accession | YP_611975 |
|---|
| Protein GI | 99078717 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0789] Predicted transcriptional regulators |
|---|
| TIGRFAM ID | [TIGR01950] redox-sensitive transcriptional activator SoxR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGCAT CACACGGATT GTCGATCGGG TACCTTGCGG AACGCACAGG CCTCGCGGTT
TCGGCGATAC GCTACTACGA AACACAAGGT CTCTTGGAGC CGTGGCGCAA TGCGGGCGGA
CAGCGCCGCT TTCATCGCGC TGACATCCGG CGACTGAGCT TCATCCTGAT TGCGCAGAAG
TTTGGCTTCA CCTTGCCCGA GATTCGCGAA CAGCTGCAAA GCCTGCCCAA TAAACGCCCC
CCCACCAAGG AAGACTGGTC ACGCTTGTCG GAGGGGTTTC GCACCCACCT GGATGCGCGA
ATCGCGATGC TCGAGAAGCT GCGCGACGAT CTCGACGGAT GCATTGGCTG TGGTTGCCTG
TCGCTGCCGA CCTGCGCACT CTACAATGCT GACGACCGCG CCGCAAAAAA TGGTCAGGGG
CCCCGCTATC TGATGGGGGA TCGGCCAAAA ACTTGA
|
|---|
| Protein sequence | MPASHGLSIG YLAERTGLAV SAIRYYETQG LLEPWRNAGG QRRFHRADIR RLSFILIAQK
FGFTLPEIRE QLQSLPNKRP PTKEDWSRLS EGFRTHLDAR IAMLEKLRDD LDGCIGCGCL
SLPTCALYNA DDRAAKNGQG PRYLMGDRPK T
|
|---|
| |