Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3627 |
Symbol | |
ID | 4075054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | - |
Start bp | 684940 |
End bp | 685746 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 638005146 |
Product | MscS mechanosensitive ion channel |
Protein accession | YP_611856 |
Protein GI | 99078598 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0668] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.143912 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGACA TTATCGAACA AGCTGGCGCC TATTGGCCGC TCGTCGTCAG CGGTGCAAAA GCGCTGGTGG TGCTGGTGCT TGGTTGGATC GCGGCCGGTA TGATTTCCGG CGCGGTACGC AATCGCATCA ACAAAACGCC ACAAATTGAC GAAACTCTCG GCAGTTTCGT GTCAAGCGTC GTACGCTGGG TTCTCTTGGC AATTGTATTG GTCGCAGTGC TCGGCGTCTT TGGCATCGAA GCCACCAGCC TTGTTGCCAT GCTTGGCGCT GCGACCCTGG CTATCGGCCT CGCGCTGCAA GGCACGCTGA GCGACCTGGC AGCCGGCTTT ATGCTAATCC TGTTTCGCCC CTACAAACTG GGCCAGTTCG TCGATATTGG CGGCACGTCG GGCACGGTGA AGGATCTCAA CCTCTTTGTG ACCGAACTCG TTACGCCTGA CAATGTGCAG ATTATCGTCC CCAATGGTCA GGCCTGGGGT GCCATTATCA CCAACTACTC GGCCCATGAC ACTCGCCGCC TCGACATCAC CTATGGCATC GACTACGGCG ACGACATCGA AAAGGCCAAA GCCATCATCC TGCGTCTTGC CGAAGCAGAT GGTCGCGTTC TGACCAGCCC GGAGCCCTGG GTACGTGTCA CCAATTTGGG CGATAGCTCT GTCGACATCT CCACACGCCT TTGGTGTGAT GCAGGTGACT ACTGGGAGCT GAAATGGACG ATGATTCAGG GTGTGAAAGA GGCCTTTGAC GCCGACGGGA TCTCCATTCC TTATCCGCAT AGCGTGGAAA TCCAGAAACA AGCGTGA
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Protein sequence | MEDIIEQAGA YWPLVVSGAK ALVVLVLGWI AAGMISGAVR NRINKTPQID ETLGSFVSSV VRWVLLAIVL VAVLGVFGIE ATSLVAMLGA ATLAIGLALQ GTLSDLAAGF MLILFRPYKL GQFVDIGGTS GTVKDLNLFV TELVTPDNVQ IIVPNGQAWG AIITNYSAHD TRRLDITYGI DYGDDIEKAK AIILRLAEAD GRVLTSPEPW VRVTNLGDSS VDISTRLWCD AGDYWELKWT MIQGVKEAFD ADGISIPYPH SVEIQKQA
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