Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3590 |
Symbol | |
ID | 4075517 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 638899 |
End bp | 640080 |
Gene Length | 1182 bp |
Protein Length | 393 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638005109 |
Product | Serine-type D-Ala-D-Ala carboxypeptidase |
Protein accession | YP_611819 |
Protein GI | 99078561 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1686] D-alanyl-D-alanine carboxypeptidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.453731 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACTATTC GCTGTATTTC GTTGACCTGC ATCGGTGTTC TGGCTGGGCT GTGGATTGCG AGTTCCACAA CCGCGGTTCA GGCCTTCGAG ACCAAAGCCC GCGCCGCCTA TGTGGTGGAT CAGGGGACCA ATACGGTTCT CCTGAGCAAG AATGCGGATG TGCCGATGCC GCCCGCATCC ATGTCCAAGT TGATGACGCT CTATGTCGCT TTCGAGGCCG TCAGGGACGG GCGACTTACC ATGGATGAGC GCCTTCCAGT GAGCGAGCAC GCCATGAGCT ACAAGGGCTC GACGATGTTC CTCGACACCA CTGATCGGGT GCGCGTCGAG GATCTGCTGC GTGGCATAAT CGTGCTCTCT GGCAATGATG CCTGCGCGGT GATTGCAGAG GCGCTCAGCC CCGATGGCAC CGAGGCAGGA TTCGCGCGCT ACATGACACG CCGCGCGCGC GAGCTTGGCA TGAACGACAG CACCTTTATG AACTCGAACG GATGGCCAGA TGATGGCCAC CGCATGTCGG TGCGCGATCT GGCCATTCTG GCAGAGCATC TTATCGAGGA TTTCCCCGAA TTCTATCCTA TGTTCGCTGA GCAGGTGTTT GAATTCGACG GCCGTGCGCC GTCAAATACA CGCAACCGAA ACCCGCTGCT GCAACTGGAC ATCGGGGCGG ATGGGCTCAA AACCGGCCAC ACCCAAGAGG CTGGATATGG TCTTGTTGGC TCTGCCAAAC AGGGCGACCG GAGGGTGATC TTTGTGATCT CGGGGCTGAA CAGTACGCCT GAGCGCGCCG AAGAGAGCGA GGCGATCGTG AATTGGTCCT TCCGCCAGTT CACCAAGAAA ACCATCGCGC GCGAGGGGAT CGCCGTCGAG CAGGCCGAAG TCTGGATGGG TGACAGCCCA ACCGTCGGGC TGGTGCCCGC CGAGGATCTT GAGATCCTGC TGCCGGCGCT TTCCGATGAT GCAGTGAAGG CCGAAGTTGT CTATACCGGC CCCGTTACCG CGCCGATTCA GGCCGGTCAG CAGTTGGCGG AACTGGTTGT TCATCCCGAA GACCTTCCCG AAATGCGTTT GCCTCTGGTG GCGCAAGCGG ATGTAGGGAC CGGGGGCTTT CCGGTGAAGG TCATGACTGC GGCCCGGGTT TTGGTGCAGC GCTTTCTGAA CGGTCCTGAG GACGCAACGT GA
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Protein sequence | MTIRCISLTC IGVLAGLWIA SSTTAVQAFE TKARAAYVVD QGTNTVLLSK NADVPMPPAS MSKLMTLYVA FEAVRDGRLT MDERLPVSEH AMSYKGSTMF LDTTDRVRVE DLLRGIIVLS GNDACAVIAE ALSPDGTEAG FARYMTRRAR ELGMNDSTFM NSNGWPDDGH RMSVRDLAIL AEHLIEDFPE FYPMFAEQVF EFDGRAPSNT RNRNPLLQLD IGADGLKTGH TQEAGYGLVG SAKQGDRRVI FVISGLNSTP ERAEESEAIV NWSFRQFTKK TIAREGIAVE QAEVWMGDSP TVGLVPAEDL EILLPALSDD AVKAEVVYTG PVTAPIQAGQ QLAELVVHPE DLPEMRLPLV AQADVGTGGF PVKVMTAARV LVQRFLNGPE DAT
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