| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3569 |
|---|
| Symbol | |
|---|
| ID | 4075491 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008043 |
|---|
| Strand | - |
|---|
| Start bp | 609942 |
|---|
| End bp | 610790 |
|---|
| Gene Length | 849 bp |
|---|
| Protein Length | 282 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638005083 |
|---|
| Product | alpha/beta hydrolase fold |
|---|
| Protein accession | YP_611800 |
|---|
| Protein GI | 99078542 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0939994 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0434942 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCT TTGAAACTTC TGATGGTTTG TCGCTCTATT TCGAAGAGCA TGGCAGCGCG
GATGGAATCC CTCTGATCTG TTTGCCGGGA CTGACCCGTG ACGGGCAGGA TTTTCGCTAC
GCGCTGCCGC ATCTGGGTGA CTACCGCGTG ATCCTAATGG ATCTGCGCGG CAGGGGGCGC
TCTGATTATG CGCAAGACCC GGCCAGCTAT AATATTCTCA CCGAAGCCGG AGATGTGATT
GCACTGATGG ATCATCTGGG CCTCACGCGC GCCGCCCTTC TAGGCACCTC GCGAGGGGGT
CTGGTTGCCA TGGCCATCGC CGGCACCGCC CGGGATCGGC TGCAGGCCGT CATCCTCAAT
GATGTCGGCC CCGACATCGC AGAGGAGGGC CTGGGCCGGA TTTTTGAATA TCTGGGCCAC
AGGCCCGCCG CCAAAACCCA TGCCGCCGCC GCTCGCATAC TCGAAGCCGC AATGCGCGAC
AGTTTTGCAA ACGTCCCCGA GGGTCGGTGG CTTGAGGAGG CGCAGACGTT TTACAAGGAA
ACACCGGATG GGCTGGAGTT GCGCTACGAC GCACGCCTGC GCGAGGCCAT GCTGGCGCAG
GCCAAGGCCC TGTCGGAGAT GGAAGAAAAA CCAAGCCTCT GGCCGTGGTT CGCCGCACTT
GATGGGCTAC CCTGCGGGGT CATCCGCGGC GCCCATTCTG ACATTCTCTC CCGAGAGACC
TTCGACGAGA TGCGCCGCCG CCTGCCCGCA CTGCAGGCGG TAGAACTCTC GGATCGCGGC
CACATTCCAT TTCTGGATGA ACCCGACGCG CTTCTCCTTA TCCATACCGT ATTGAAAGAC
ATAAAATGA
|
|---|
| Protein sequence | MSRFETSDGL SLYFEEHGSA DGIPLICLPG LTRDGQDFRY ALPHLGDYRV ILMDLRGRGR
SDYAQDPASY NILTEAGDVI ALMDHLGLTR AALLGTSRGG LVAMAIAGTA RDRLQAVILN
DVGPDIAEEG LGRIFEYLGH RPAAKTHAAA ARILEAAMRD SFANVPEGRW LEEAQTFYKE
TPDGLELRYD ARLREAMLAQ AKALSEMEEK PSLWPWFAAL DGLPCGVIRG AHSDILSRET
FDEMRRRLPA LQAVELSDRG HIPFLDEPDA LLLIHTVLKD IK
|
|---|
| |