| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3527 |
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| Symbol | sdhA |
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| ID | 4075206 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 560816 |
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| End bp | 562624 |
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| Gene Length | 1809 bp |
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| Protein Length | 602 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638005042 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_611761 |
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| Protein GI | 99078503 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGCAG CATATGAATA TGAAACCCAT GAATATGACG TGGTGGTTGT GGGCGCCGGC
GGCGCCGGTC TGCGGGCGAC GCTTGGCATG GCCGAGCAGG GTCTGCGCAC AGCCTGCGTA
ACCAAGGTCT TCCCGACCCG CTCGCACACC GTGGCCGCAC AGGGGGGCAT CGCCGCCTCG
CTTGGCAACA TGGGGCCCGA CAGCTGGCAG TGGCACATGT ATGACACCGT CAAAGGCTCG
GATTGGCTGG GTGACACGGA TGCGATGGAA TATCTCGCCC GTGAGGCGCC CAAAGCGGTC
TACGAACTTG AGCACTACGG CGTGCCGTTC TCGCGGACGG AAGAAGGCAA GATCTATCAG
CGTCCCTTCG GGGGTCACAC CACCGAGTTT GGTGAAGGCC CGCCGGTGCA GCGCACCTGT
GCCGCCGCCG ACCGGACCGG CCACGCGATC CTGCACACGC TCTATGGGCA GAGCCTCAAG
AACAACGCGG AATTCTATAT CGAGTATTTC GCCATCGACC TGATCATGTC CGAGGACGGG
CAATGTCAGG GTGTGGTGTG CTGGAAGCTC GATGATGGCA CCATGCATGT CTTCAACGCC
AAGATGGTGG TGCTGGCGAC CGGCGGTTAT GGCCGTGCCT ATTTCTCTGC GACCTCGGCC
CATACCTGCA CCGGCGACGG TGGCGGTATG GTAGCGCGCG CGGGTCTGCC GCTTCAGGAT
ATGGAGTTTG TGCAGTTCCA CCCGACCGGC ATCTACGGCT CCGGCTGTCT GATCACCGAG
GGCGCGCGCG GCGAAGGCGG CTACCTGACG AACTCCGAGG GTGAGCGCTT TATGGAGCGG
TATGCGCCCA ACTATAAAGA CCTCGCACCG CGCGACTATG TCTCGCGCTC CATGACCATG
GAGATCCGCG AAGGTCGTGG TGTGGGTGAG CATGGCGACC ATATCCACCT GAACCTCAGC
CACTTGCCGG CCGAAGCGCT GGCGGAGCGT CTGCCGGGGA TTTCCGAGTC TGCAAAAATC
TTTGCAGGTG TCGACGTCAC CAAAGAGCCG ATCCCGGTTC TGCCGACCGT GCACTACAAC
ATGGGCGGTA TCCCCACGAA CTATTGGGGT GAGGTGCTGA ACCCCACTGA GGACAACCCG
ACCGGTGTTG TTCCGGGTCT TATGGCCGTG GGTGAGGCGG GCTGTGCCTC TGTGCATGGT
GCCAACCGTC TGGGCTCCAA CTCTCTCATC GACCTTGTGG TCTTTGGCCG TGCATCGGCG
ATCCGCGCCG GCAAGGTCGT GGACCCAGAG GCCCCCAACC CGGTGCTGAA CCAGGCGTCC
ATCGACAAGG CCTTTGATCG CTTTGACGGG CTGCGCAACG CCAAGGGTGG CACGCCGACC
GCGGAACTGC GCCTTGAGAT GCAGCGCACC ATGCAGGCGG ATGCGGCGGT GTTCCGCACC
GACAAGACCC TCAAGGAAGG CGTCGAGAAG ATGGAGGTGA TCGCGGCCAA GCTCGACGAT
CTCCATGTCA CCGATACCTC GTTGGTGTGG AACTCCGACT TGATGGAGAC GCTCGAGCTT
ACCAACCTGA TGCCCAACGC GCTGGCGACC ATCGTTGGCG CTGAGGCGCG CAAGGAAAGC
CGTGGTGCCC ATGCGCATGA GGATTACGCC GAGCGTGACG ATGAAAACTG GCGTGTGCAC
ACCGTGGCAC GGGTTGAGGG CAACAAGACC TCCCTCAGCT ATCGTCCGGT GATTGTTGAT
CCGCTGACCA ATGAGGACGC CGGTGGCATC AGCCTCAAGA AGATCGCGCC CAAGGCTCGG
ACCTTCTAA
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| Protein sequence | MTAAYEYETH EYDVVVVGAG GAGLRATLGM AEQGLRTACV TKVFPTRSHT VAAQGGIAAS
LGNMGPDSWQ WHMYDTVKGS DWLGDTDAME YLAREAPKAV YELEHYGVPF SRTEEGKIYQ
RPFGGHTTEF GEGPPVQRTC AAADRTGHAI LHTLYGQSLK NNAEFYIEYF AIDLIMSEDG
QCQGVVCWKL DDGTMHVFNA KMVVLATGGY GRAYFSATSA HTCTGDGGGM VARAGLPLQD
MEFVQFHPTG IYGSGCLITE GARGEGGYLT NSEGERFMER YAPNYKDLAP RDYVSRSMTM
EIREGRGVGE HGDHIHLNLS HLPAEALAER LPGISESAKI FAGVDVTKEP IPVLPTVHYN
MGGIPTNYWG EVLNPTEDNP TGVVPGLMAV GEAGCASVHG ANRLGSNSLI DLVVFGRASA
IRAGKVVDPE APNPVLNQAS IDKAFDRFDG LRNAKGGTPT AELRLEMQRT MQADAAVFRT
DKTLKEGVEK MEVIAAKLDD LHVTDTSLVW NSDLMETLEL TNLMPNALAT IVGAEARKES
RGAHAHEDYA ERDDENWRVH TVARVEGNKT SLSYRPVIVD PLTNEDAGGI SLKKIAPKAR
TF
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