Gene TM1040_3510 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_3510 
Symbol 
ID4075189 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008043 
Strand
Start bp544384 
End bp545889 
Gene Length1506 bp 
Protein Length501 aa 
Translation table11 
GC content63% 
IMG OID638005025 
Productdihydrolipoamide succinyltransferase 
Protein accessionYP_611744 
Protein GI99078486 
COG category[C] Energy production and conversion 
COG ID[COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes 
TIGRFAM ID[TIGR01347] 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component)
[TIGR02927] 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.918883 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.992852 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCACCG AAGTGCGCGT GCCCACTCTG GGCGAATCCG TGACCGAAGC CACCGTCGCC 
ACCTGGTTCA AGAAGCCGGG CGACACTGTT GCCGCAGACG AGATGCTCTG TGAGCTGGAA
ACCGACAAGG TCACAGTCGA AGTGCCCGCC CCGGCGGCTG GCACTCTGGC CGAGATCGTT
GCCAAGGAAG GCGACACCGT GGGCGTTGAT GCGCTCCTGG CCAATATTAC CGAAGGCGGC
GCCGCAGCAG CCTCAGCCCC GGCAGCGAAA CCCGCCCCGG CTGAGGCACC TGCCTCTTCG
GGTGGGGATG CTGTTGACGT GATGGTGCCG ACGCTGGGCG AAAGCGTCTC TGAGGCGACC
GTTTCCACAT GGTTCAAGAA AGTCGGTGAC AGCGTCGCGC AGGACGAAAT GCTTTGCGAG
CTGGAAACCG ACAAGGTTTC CGTCGAGGTG CCCGCGCCTG CCGCTGGCGT TCTGGCCGAG
ATCACCGCGC CCGAAGGCAC CACCGTGGAC GCCTCTGCCA AACTCGGCGT CATCTCCGGT
GACGGTGCAG CGGTAGCGGC GGCCCCGGCT GCAGCGCCCG CTGCGGCGGA GACCCCTGCC
GCCGTCTCCA AGGATGTCGC CAATGCGCCA TCGGCGGAAA AGGCGATGGC CGAGGCCGGT
CTCTCCGCAT CGGATGTCAA AGGCACAGGC CGCGACGGAC GCATCATGAA AGAGGACGTG
GCATCGGCGA TCGCCGCCGC AAAATCCGCG CCCGCCCCGA CAGCGGCTCC CGCAGCCCCG
CGCGCGCCGG TGTCTGCCGA TGATGCCTCG CGCGAAGAAC GCGTAAAAAT GACCCGTCTG
CGCCAGACCA TCGCCAAGCG TCTGAAGGAC AGCCAGAACA CTGCTGCCAT GCTCACTACC
TACAATGAGG TCGACATGAC CGAGGTGATG GCGCTGCGCA ACGAATACAA AGACCTGTTC
CTGAAGAAGC ACGGCGTGAA ACTGGGCTTT ATGTCCTTCT TCACCAAGGC CTGCTGCCAC
GCGTTGAAAG AGGTCCCCGA GGTCAACGCC GAGATCGACG GCACCGACAT CGTCTACAAG
AACTTCGTCC ACATGGGCAT CGCCGCAGGC ACGCCCACGG GTCTGGTGGT TCCGGTCATC
CGCGACGCCG ATGCGATGTC CTTTGCCGAT ATTGAGAAGG CGATTGCCGA AAAAGGCGCG
CGCGCCCGTG ACGGCAAGCT GTCGATGGCG GAAATGCAGG GCGGCACCTT CACCATCTCC
AACGGTGGTG TCTATGGCTC GCTGATGTCC TCGCCGATCC TGAACCCGCC GCAGTCCGGT
ATCCTCGGCA TGCACAAGAT CCAGGACCGC CCGATGGCAA TCAACGGCAA GGTGGAAATC
CGCCCGATGA TGTATCTGGC GCTGTCCTAT GACCACCGTA TCGTCGACGG CAAAGGCGCT
GTGACCTTCC TCGTGCGCGT CAAAGAAGCG CTGGAAGATC CCCGCCGGTT GTTGATGGAT
CTGTAA
 
Protein sequence
MTTEVRVPTL GESVTEATVA TWFKKPGDTV AADEMLCELE TDKVTVEVPA PAAGTLAEIV 
AKEGDTVGVD ALLANITEGG AAAASAPAAK PAPAEAPASS GGDAVDVMVP TLGESVSEAT
VSTWFKKVGD SVAQDEMLCE LETDKVSVEV PAPAAGVLAE ITAPEGTTVD ASAKLGVISG
DGAAVAAAPA AAPAAAETPA AVSKDVANAP SAEKAMAEAG LSASDVKGTG RDGRIMKEDV
ASAIAAAKSA PAPTAAPAAP RAPVSADDAS REERVKMTRL RQTIAKRLKD SQNTAAMLTT
YNEVDMTEVM ALRNEYKDLF LKKHGVKLGF MSFFTKACCH ALKEVPEVNA EIDGTDIVYK
NFVHMGIAAG TPTGLVVPVI RDADAMSFAD IEKAIAEKGA RARDGKLSMA EMQGGTFTIS
NGGVYGSLMS SPILNPPQSG ILGMHKIQDR PMAINGKVEI RPMMYLALSY DHRIVDGKGA
VTFLVRVKEA LEDPRRLLMD L