Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3466 |
Symbol | |
ID | 4075100 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | - |
Start bp | 489983 |
End bp | 491395 |
Gene Length | 1413 bp |
Protein Length | 470 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638004975 |
Product | aromatic-L-amino-acid decarboxylase |
Protein accession | YP_611700 |
Protein GI | 99078442 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.811665 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACTGGA CCGATTTTGC ATCCTGGGGC CGCAAGGTCG CCGATTGGGC GCAGGACTAT CACCTCACCG TGGGCGAGCG CCCGGTGCGC GCGCAGACCA AACCCGGTGA TATGCTGACC GCCCTGCCCG AAACACCGCC GGAACAGGGC GAGGGGATGG AGACGATCTT TGCCGATTTT GAGGAAAAGG TGATGCCCGG CATCACCCAT TGGCAGCACC CGCGCTTCTT TGCCTATTTC GCCTCCAACG CCGCCGCGCC CTCGGTGCTG GCGGAATTCC TGACCTCCGC CATCGCGCCG CAATGTATGC TCTGGCAGAC CTCTCCGGCG GCGACCGAGA TGGAGACCCG GATGATGGAC TGGCTGCGCC AATCCCTTGG CCTGCCGAGC GAATTTCGCG GCGTCATTCA GGACAGCGCC TCTTCGGCGA CCCTTGCTGC GGTGCTCACC ATGCGCGAAC GGGCCTTGAA CTGGCAGGGC AATCAACAGG GGCTCGCGGG CCAGCCGACC TTGCGGATCT ATTGTTCGTC CGAGGTGCAC ACCTCGGTGG ACCGTGCGAT CTGGGTTGCG GGCATCGGTC AGGCCAACCT CGTGCGCGTA CCCATCAAGG GCGACTGGCG CGGCATGGAT CCCGCAGCGC TTGAGACTGC GATCCAGTCG GACAAGGCCG CAGGCCTTCA ACCCGCTGGC GTCATCCTCT GTGTGGGCGG CACCGGCACC GGCGCCACGG ACCCCATCGC GGACTGCATC AAGGTGGCGC AGAATCATGG GCTTTATACC CATGTGGACG CGGCATGGGC CGGTTCCGCG ATGATCTGCC CGGAGTTCCG CGCGTATTGG CCGGGCATTG AGGGCGCAGA CAGCATCGTT TTCAATCCGC ATAAATGGCT CGGCGCGCAG TTTGATTGCT CGGCGCATTT CCTTAAGAAC GCGGACGATC TGGTGCGCAC CCTCGCCATC AGCCCGGAAT ACCTCAAGAC CCACGGTCAC GACGGCATCA TCAACTATTC CGAATGGTCG GTCCCCCTGG GCCGCCGCTT CCGCGCGCTA AAGATCTGGT TCCTGATCCG CACCTATGGC CTTGAAGGAT TGCGCCAACG CATCCGCAAT CACGTTGCAT GGTCGCGCCA GCTTCACGAC GCGCTTGCGC AAGAGCCGGA TTTTGAAATC GTCACCCCGC CGATGTGGTC GCTCTGGACC TTCCGCTACG CGCCTGATGG GGCCACGGAT CTCGATGCGC TGAACCTCGA ACTCGTGAAC AGGATCAACG ACGACGGCCG CATCTACCTC ACCCAGACCC GCGTGGACGG CGTGCTGGTG ATCCGGTTTC AGGCGGGCGC GTTTGAAACC ACCGAGGCTG ACATCATGCT CGCCCATGAT GTGATCACAG AAATCGCAAG AGGACTGACC TGA
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Protein sequence | MNWTDFASWG RKVADWAQDY HLTVGERPVR AQTKPGDMLT ALPETPPEQG EGMETIFADF EEKVMPGITH WQHPRFFAYF ASNAAAPSVL AEFLTSAIAP QCMLWQTSPA ATEMETRMMD WLRQSLGLPS EFRGVIQDSA SSATLAAVLT MRERALNWQG NQQGLAGQPT LRIYCSSEVH TSVDRAIWVA GIGQANLVRV PIKGDWRGMD PAALETAIQS DKAAGLQPAG VILCVGGTGT GATDPIADCI KVAQNHGLYT HVDAAWAGSA MICPEFRAYW PGIEGADSIV FNPHKWLGAQ FDCSAHFLKN ADDLVRTLAI SPEYLKTHGH DGIINYSEWS VPLGRRFRAL KIWFLIRTYG LEGLRQRIRN HVAWSRQLHD ALAQEPDFEI VTPPMWSLWT FRYAPDGATD LDALNLELVN RINDDGRIYL TQTRVDGVLV IRFQAGAFET TEADIMLAHD VITEIARGLT
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