| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3437 |
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| Symbol | |
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| ID | 4075611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 461879 |
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| End bp | 463357 |
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| Gene Length | 1479 bp |
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| Protein Length | 492 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638004946 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_611671 |
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| Protein GI | 99078413 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.58601 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.852102 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATTTCA AAAAACCCAT TCTGGCGGCC GTCTCTGCGC TCGCCCTTCT GGCGGGGCCT
GCGCTGGCCA AGGACACCGT GACCTACGCC ACCCAGCTGG AGCCGCCGCA TCTCGATCCC
ACTGGCGGCG CGGCGCAAGC CATCGATACG GTGGTGTATC TCAATATCTT CGAGGGCCTC
ACGCGCTTTA CCCCGGATGG GGCTGTGGTG CCGCTTCTTG CGAAATCCTG GGAGATTTCC
GAGGACGGTC GGACTTATAC GTTCACTCTG CAAGAGGGCG TCACCTTTCA CGACGGCAGC
ACGCTTGATG CGCAGGATGT GAAATTCTCG CTCGATCGCG CCCGCGCCGA GGACAGCACC
AACGCCCAGA AGGCGCTCTT TGCGGACATT GCGGACGTCA CAGTGAGTGA TGCGCAAACC
GTGGTGGTGA CGCTCTCCGA GCCCAACGGC AATTTCCTCT TCAACCTCGC CTGGGGCGAT
GCGGTGATCG TGGCCGAAGA GTCGGTCGAG ACCCTGAAAA CTGCTCCTGT GGGCACCGGC
CCCTACCGCT TTGGCGAATG GGTGCAGGGA GACCGGGTAG AGATGGTGCG CAACCCGAAT
TACTGGGGCG AGATCCCCGA GCTGACGGGC GCCACGATCA AGTTCATCTC CGACCCCACC
GCCGCCTTTG CCGCGATGAT GGCCGAAGAC ATTGACGCCT TTGATAATTT CCCGGCGCCA
GAGAATATGA TCCAGTTCGA GGCCGATCCG CGTTTTCAGG TGATCGTTGG CTCCACCGAA
GGCGAGACGA TCCTGTCGAC GAACAACGCC CAGGCACCCT TTGACAACCC CAAAGTGCGT
CAGGCGCTGG CCCATGCGAT TGATCGTCAG GCCATCGTGG ATGGTGCGAT GTTTGGCTAT
GGCACGCCGA TTGGCACCCA TTTTGCGCCG CATAACCCGG CCTATGTGGA TCTCACCGGT
CAGTCCGATT TTGACCCCGA CAAAGCCCGC GCGCTTCTGG CCGAAGCGGG CCTTGCAGAT
GGGTTCACCA CCACGCTGCA CCTGCCGCCC CCCGCCTATG CCCGTCGCGG TGGCGAGATC
GTGGCCGCGC AGCTGGCCCA GGTGGGTATC ACCGCCGAGA TCATCAATGT GGAATGGGCG
CAGTGGCTTG AGACCGTGTT CAAAGGCAAG ACCTATGGTC TCACGATCGT CAGCCACACC
GAGCCGATGG ACATCGGGAT CTATGGCCGT CCGGATTATT ACTTCCAGTA TGACAATCCG
GAGTTCCAGG GCGTGATGAG CCGCCTCAAC GCGACCACCG ACCCGGACCA GCGTACGGCG
CTCCTGCAGG ACGCCCAGCG CATGATCGCG GATGACTATG TTAACGGCTA CCTGTTCCAG
CTGGCAAAGC TCGGCGTTGC CAAAGCCGGC CTTGAGGGCA TCTGGGCCAA TGCTCCGGCC
GCTGCCATCG AAATCGGGGC GCTCAGCTGG GCTGAGTAA
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| Protein sequence | MNFKKPILAA VSALALLAGP ALAKDTVTYA TQLEPPHLDP TGGAAQAIDT VVYLNIFEGL
TRFTPDGAVV PLLAKSWEIS EDGRTYTFTL QEGVTFHDGS TLDAQDVKFS LDRARAEDST
NAQKALFADI ADVTVSDAQT VVVTLSEPNG NFLFNLAWGD AVIVAEESVE TLKTAPVGTG
PYRFGEWVQG DRVEMVRNPN YWGEIPELTG ATIKFISDPT AAFAAMMAED IDAFDNFPAP
ENMIQFEADP RFQVIVGSTE GETILSTNNA QAPFDNPKVR QALAHAIDRQ AIVDGAMFGY
GTPIGTHFAP HNPAYVDLTG QSDFDPDKAR ALLAEAGLAD GFTTTLHLPP PAYARRGGEI
VAAQLAQVGI TAEIINVEWA QWLETVFKGK TYGLTIVSHT EPMDIGIYGR PDYYFQYDNP
EFQGVMSRLN ATTDPDQRTA LLQDAQRMIA DDYVNGYLFQ LAKLGVAKAG LEGIWANAPA
AAIEIGALSW AE
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