| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3431 |
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| Symbol | |
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| ID | 4075605 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 454284 |
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| End bp | 456554 |
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| Gene Length | 2271 bp |
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| Protein Length | 756 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004940 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_611665 |
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| Protein GI | 99078407 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGCAAA CACAGCCTGA CACGGATGGA CCGTTGTCCC AGCACAATGC GCGCTTCAGC
CCTCGTGGGT TGTTGATCCG GTACGCGGTC ATCCGCGCGC GGATGTATTA CGCGCGGATG
TTTGCGGCGG CAGGTCTCAC ATCGGTGCTG GCGGTGATCT TTGGCCCCTT CTGGCCGCTC
GTCTTTTTTG TGCTCTACCT GATCACGGAC AAGGCAGAGA CCACCTATCT GCGCGGCCTG
CCGGAGCGGC TTGAAAATGG CACATCGCTT GCCAAAGCCA AGCGGATCAT CTTTGTGTTT
TCTGTTCTCT ACGCTGGCAG TGTCTGTGGA TTTGCCGCCA TCCCCTATGT GCAGATGCAT
ACGGAGGCGG GCGCGCATGA AATCCTGGCG GAGCCGTTCT TTGCGCTGTG TATCGTGCTT
GGACCCGCGC TGAGTGCCGC TTTGGATCTG AGATATGTGC CGCTTGCCGC ATCGGTGCGC
CTCTTGATGC TTTCGCTTTT GCCATTTGGC CTGACCGCGC ATATTTTGCT CCAGAACCAG
ACACATGGCG CTGATTTGCA GCTGATGGTG GCGGGGCTTG TCGCCTTCTT TTTCACGCAG
ATCTGGTTTG TCGTGATGGT GCAGAAACGG CACCGCAATT CACGTCGGAA CCTGCGGTCT
CAGGCGCTGC AACGGCAGGC GCTCGAGGAC GCCTACATGC GTCTCTTTGA CCAAAAACAA
GAAGCGCGAC GCCTGGCGAT GATTGCCGAA CACGCCAATG ATGGCGTGAT GCTGATTGGT
CGGGACGGGA TCGTGCGCTG GGCCAACGAC GGGTTTTCGC GCCTCACAGG CTACACGTTT
GACGAACTTG TCGGGCAGAA CCCGGGCAAG ATCCTCAACA GTGAAAACAC CGATCCCGCC
GCCCTGCGGG TCATCGAGGC GGGGCGCGAA AAAGGAGAGC CTTTCCGCGC CGAGCTCATC
AATCGACGCA AGGATGGCAA GGAAATCTGG ATCGAAACCA ATCAGGTTCC GGTCTTTGAC
GACACCGGGC AGATCGAAAC CTACATCGCG GTAGAGCGGG ATGTCACGGC CACCAAGGAG
TATGAACGCC AACTGAAAGA AGCGCGTTTG GCCGCGGAAG AAGGCGCACG GATCAAGGAA
GAGTTCCTGG CCACCATGAG CCACGAATTC CGCACCCCGA TGAACGGGGT GATCGGCATG
GCGCAGATGT TGCAGGCAAC GGATCTGAGC GAGGATCAAC GCCTGTACAC CGACACGATC
CTTGGGTCCT CGCGGGCGCT TCTTGCGCTG ATCAACGATG TGCTTGATCT GTCGCATATG
AACGCTGCCG GGGTGTCGCT GTTCAACGTT GATTTTGATC TCCATGCCTG TGTCGGCGAC
ATCGTCCGCC TGCTGAGCGG TCAGGCCGAC GAAAAGCATC TGGAGCTGTC GGTTGAGATT
GACCCGGACG TGCCCGTGTG GGTCACCGGA GATGACCGCC GGCTGCGCCA GATCCTCGTC
AACCTGCTTG GCAACGCAGT GAAATTCACC ACAAGCGGGT CGATCTTCAT TCGGCTGCGT
GGCGTGGTGA CCGGAGATCA GGTCGCGCTT AAGATTGAGG TCGAAGACAC CGGGATCGGT
ATACCTGCCG ACAAGCTGGA GAAGATCTTT GAGCGCTTCT CGCAGGCGGA CAATGCCATT
TCCCGCAAGT ATGGCGGCAG CGGGCTTGGG TTGTCGATCT CGCGCGGGTT GGCGCAGGCG
ATGGGCGGCG ACATCGATGT CACCTCGGTC GAAGGGGAGG GGGCCTGTTT TACCCTCATG
CTCGACATGG GGGTCGCGGA CTGCCCTTCT ATCGTCGCCG ATGAGGCTGA GGATGCGGAC
TCCCTGCCCG CGTTGGACCA GCTTCAGGGT TTGCGCTTGT TGGTTGCCGA GGACAATCGC
GTCAATCGCC TCCTGATCCG CAAGTTTCTC GACGATGCCC CGCTCGAGCT GCGCTTTGCC
ACCAATGGCG CAGAGGCGCA GGAACTGGCG AAACGGTTCC GCCCACAGGT GATCCTGATG
GACATGTCCA TGCCCGAGGT GAACGGGCTC GAAGCCACCC GCGCGATCCG CTCGTTTGAC
ATAACCCAGC CCTATATCGC GGCGCTCACA GCCAATGTCG ACGAGACGAG CCGGCAGGCC
TGTGTAGATG CAGGTATGGA TACGTTCCTG AGCAAGCCTC TGTCGCGCAA GGAACTTTTG
AACCTGCTTC TGACGTTTTC CGAAAGGGCG CGGGCATCAG AACGCGGTTG A
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| Protein sequence | MEQTQPDTDG PLSQHNARFS PRGLLIRYAV IRARMYYARM FAAAGLTSVL AVIFGPFWPL
VFFVLYLITD KAETTYLRGL PERLENGTSL AKAKRIIFVF SVLYAGSVCG FAAIPYVQMH
TEAGAHEILA EPFFALCIVL GPALSAALDL RYVPLAASVR LLMLSLLPFG LTAHILLQNQ
THGADLQLMV AGLVAFFFTQ IWFVVMVQKR HRNSRRNLRS QALQRQALED AYMRLFDQKQ
EARRLAMIAE HANDGVMLIG RDGIVRWAND GFSRLTGYTF DELVGQNPGK ILNSENTDPA
ALRVIEAGRE KGEPFRAELI NRRKDGKEIW IETNQVPVFD DTGQIETYIA VERDVTATKE
YERQLKEARL AAEEGARIKE EFLATMSHEF RTPMNGVIGM AQMLQATDLS EDQRLYTDTI
LGSSRALLAL INDVLDLSHM NAAGVSLFNV DFDLHACVGD IVRLLSGQAD EKHLELSVEI
DPDVPVWVTG DDRRLRQILV NLLGNAVKFT TSGSIFIRLR GVVTGDQVAL KIEVEDTGIG
IPADKLEKIF ERFSQADNAI SRKYGGSGLG LSISRGLAQA MGGDIDVTSV EGEGACFTLM
LDMGVADCPS IVADEAEDAD SLPALDQLQG LRLLVAEDNR VNRLLIRKFL DDAPLELRFA
TNGAEAQELA KRFRPQVILM DMSMPEVNGL EATRAIRSFD ITQPYIAALT ANVDETSRQA
CVDAGMDTFL SKPLSRKELL NLLLTFSERA RASERG
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