| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3414 |
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| Symbol | |
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| ID | 4075588 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 435386 |
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| End bp | 436039 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638004923 |
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| Product | Na(+)-translocating NADH-quinone reductase subunit D |
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| Protein accession | YP_611648 |
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| Protein GI | 99078390 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1347] Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrD |
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| TIGRFAM ID | [TIGR01939] NADH:ubiquinone oxidoreductase, Na(+)-translocating, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.49563 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.460731 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCACAAA CCTATCGTTC GCAACTGGTC GATCCGCTGA TCGACAACAA CCCGATCACG
TTGCAGGTTC TGGGCATCTG CTCGGCGCTT GCTGTGACCT CCTCGATGCA GGTGGCCTTT
GTGATGGCAC TGGCGGTGAC CTTCGTGACC GGCTTTTCGT CGATGTTCAT CTCGATGCTG
CGCAACCAGA TCCCTTCTTC GATCCGGATC ATCGTGCAGA TGGTGATCAT CGCCTCGCTG
GTGATCCTGG TGGATCAGCT CCTGAAGGCC TACGCCTATG AAATCTCCAA GACGCTTTCG
GTCTTTGTGG GTCTCATCAT CACCAACTGT ATCGTGATGG GCCGCGCCGA AGCCTTTGCG
ATGAAGAACC CGCCCGTGGC GAGCTTTATC GACGGGGTTG GCAATGGTCT TGGTTACGGG
CTTTTGCTGC TGATCGTTGC ATTCTTTCGC GAGCTTTTCG GCGCCGGATC GCTCTTTGGT
GTGACCATTC TGGAGACCGT GAACAACGGC GGCTGGTATG TGCCCAACGG CATGATGCTG
CTGCCGCCGT CGGCCTTCTT TGTGATCGGC CTTCTGATCT GGGGGATCCG CACATGGAAA
CCGGCACAGG TCGAAGAGCG TGAGTATAAA ATTCAGACGG TGGAGGCCCA CTGA
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| Protein sequence | MAQTYRSQLV DPLIDNNPIT LQVLGICSAL AVTSSMQVAF VMALAVTFVT GFSSMFISML
RNQIPSSIRI IVQMVIIASL VILVDQLLKA YAYEISKTLS VFVGLIITNC IVMGRAEAFA
MKNPPVASFI DGVGNGLGYG LLLLIVAFFR ELFGAGSLFG VTILETVNNG GWYVPNGMML
LPPSAFFVIG LLIWGIRTWK PAQVEEREYK IQTVEAH
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