| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3357 |
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| Symbol | |
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| ID | 4075256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 368526 |
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| End bp | 369584 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638004865 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_611591 |
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| Protein GI | 99078333 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.422667 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.485488 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCAAAA CTTTGGTTAA GACAGCTGCG CTGTCGGTGC TTCTGGCAGG CACCGCCCTG
ACAGCAAGTG CTGCCGATTA CACACTGCGT GCAACGGCAA ACTCGAACGA AAACGACGAA
GACTACGATG GCCTCGTGGT TTTCAAAAAC TACGTCGAAG CCGCATCCAA TGGCGCCATC
GAAGTGGAGC TGTTCATCGG TACGCAGCTG TGCTCGAACG GGGCGGAATG CCTTCAGGGC
GTCGCGGATG GTTCGATTGA CATCTATATC TCGACCTCGG GCGGTGCCTC CGGCCTGTTC
CCCTATGTGC AGGTTCTGGA CCTTCCGTAT CTGATGGCGG ACGACCGGAT TGCAGAGCAT
GTCCTGTCCG GTGATTTCAC CCGCACCATG CGGGACATGG CTCTGGAAGA TTCCGGCGAC
ACCATTCGTC TGATGACCAT CGGCAACACC GGCGGTTGGC GCAACTTTGC CAACACCAAA
CGCCGCATCG CAGAGCCTGC GGACATGGAA GGTTTGAAGA TTCGCACCGT GGTTGCGGAC
CTGCCGCAAG AACTGGTCAA AGCCCTGGGT GCATCCCCGA CCCCGATCCC GTGGCCGGAA
CTGTTCACCT CCTTTCAGAC CGGAGTTGTT GAAGGGTCGA AGAACGGTAT CACCGACATC
ATGGGCATGA AGTTCCCCGA TGCTGGTTTG CAGTATGTCA CCCTGGATGG CCACGCCTAC
ATGGGGGCCT TGTGGTGGAT GTCGAACCAA AGCTTCCAGG CGATGCCGGA AGACATGCGC
CGCGTGGTTG TGGACGGCTT CTACGCGCTG CAGCAGGCGA CCTTCGCGTC TCCGAAGCGT
AAATCCATCG CGGCTTACGA AGAATTCGTA GCAGGTGGTG GCGACCTCTA CGTACCGACC
CCGGACCAGA AAGCCGCCTT CAAAGAAGCC GCTTCCCCGG TCTACGACTG GTTCAAGTCC
AACGTGACCC GTGGTGACGA AATCTTCACC GCGCTGACCG ACGCCGTGGC AGCTGCCGAG
GCCGAGATCG ACGCGGATCG CGCTAAAGAC CTGAAATAA
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| Protein sequence | MLKTLVKTAA LSVLLAGTAL TASAADYTLR ATANSNENDE DYDGLVVFKN YVEAASNGAI
EVELFIGTQL CSNGAECLQG VADGSIDIYI STSGGASGLF PYVQVLDLPY LMADDRIAEH
VLSGDFTRTM RDMALEDSGD TIRLMTIGNT GGWRNFANTK RRIAEPADME GLKIRTVVAD
LPQELVKALG ASPTPIPWPE LFTSFQTGVV EGSKNGITDI MGMKFPDAGL QYVTLDGHAY
MGALWWMSNQ SFQAMPEDMR RVVVDGFYAL QQATFASPKR KSIAAYEEFV AGGGDLYVPT
PDQKAAFKEA ASPVYDWFKS NVTRGDEIFT ALTDAVAAAE AEIDADRAKD LK
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