| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3285 |
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| Symbol | |
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| ID | 4075689 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 286135 |
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| End bp | 291822 |
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| Gene Length | 5688 bp |
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| Protein Length | 1895 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638004794 |
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| Product | Outer membrane autotransporter barrel |
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| Protein accession | YP_611521 |
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| Protein GI | 99078263 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR01451] conserved repeat domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.761058 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTGAGT TTTTGTGCGA ATGTGTGGTG CGCGACAAAC GTTGCGCCAT GACACCTCCG
GTTTCAGGGT ACAAAACTGG GCGGGGGCCG ATTGTTAAAC GCCTCAGTGG CGTATTCTTC
TTTATCATGG TCTCGCTTTT TGTAGCCCCA CAGGCGGCAC AAGCGTCGTT TACGAGTTGC
CCAGCCAATA CCTCTGGCGG TGACCCGCTG ACAATGAATC TCACTGTGGA TGAGTGCACC
TTGCAAAGCG GCGCGGCCGT GTCGGCATTG TCTGACGACC TGATACAAAT TCAGATTGCT
GGAGGATCGA GCACCAACTT TTTCATCTTT GACCCTTCGG CAAATGATCT CCGTGATCTG
ATATTCAGCG TCAATAACGG CAGCCCTCAA GGCACGCTCG ATGCGGATGG CGGCAGCTTG
TCCGGGATCG ATTGTGCGGC GGGCTGCACG GTGAGCGGCA CCCACGGGGG ATCGCCATTC
ACCTTTACCT ACACCGCCTC AGGCGGCGGC GGATCTCTGA GTTCTCCGGC TGAGATTGAC
GATCTCGTTT CCTCCACGGG CAACACGGTT GCGGATGGTG GAACCGACAC GATTGCAGCT
GCAATCGACA GCGGTACCCC GACGACCATC ACCTACGATG TCAGCAACAG TGGTTCGGGC
ACGCTATCTC TGTCTGGGTT GACACAGGGC ACCCCGACGA ATGCTTCATT TGGGGCGACC
TCAATAGATG CGGCATCCGT GGCTTCAGGC GGGACAGAGA CCGATGCCAT CAGCATCACA
TTTACCCCAA GCTCCACCAC GGATGGTGCC AGTTTCTCTG TTCCGTTCAG TTTCACAACC
AACGATGCGG ATGATGGAAC CGATGAAACC ACCTTCAATG TCACCATCTC CGGCACAATC
AATGCCGAAG CCGAGATCAG CGATCTGACC TCTTCAACAA CTAATACGGT TGCGGATGGA
GGTAGCGATG CGCAGGGCAC AGTAGCCTCC GGAAGCGCTC AGGCTCTCAT CTACACGATC
ACGAACTCGG GTACGGCGGA CCTCAGTGTT GCGACGGCCT CCTCGTCAAG CGCCAGCAAT
GTTACCGTGA ATTCGATTGG CGCGCCGGGC AGCACAACGG TTTCCGCAGG CGGCGGCACG
ACACAGTTCA CCGTGCAATA TACGCCCAGC GCGGCGGGGG CCTTCTCTTT TGATCTGTCA
TTTGTGAACA GCGATGCAGA CGAAGACCCC TTCAATTTCA CCGTAAGCGG CACGGCGACG
GCGGCGCCTG GGTTCAGCCA GGCGATTGCA CCGGGGACGA TCCTTGCGGA TGGGACGGCG
ACGGTGACCT TTACCATTGA CAACAGCGCT AATGCCACGG CGGCAACGTC GCTCGACTTT
AGCAATAGTC TGCCCGCAGG GGTTGAGGTC GCCGCAACGC CCAATGCGTC GACCACCTGT
ACCGGTGGCA CGCTGACGGC GGTGGCTGGC AGCGGCACGC TCTCCTATAC CGGTGGCACG
GTGGGCGCGG GCGCCAGCTG CACGGTGCAG GCGGATGTGA CCGCTGGAAC GGACGGCAGC
TACAGCAACA CCAGCGGCGA TCTGACCTCG AGCCTTGGCA ATTCCGGCAG CGCCTCGGCC
TCGCTGACGG TGGCCTCGCC AGAGATCGAT CTCCAGCGCC CGGCGGCAAC GTCTCTGGCG
GATGGTGACA CCGATGCGCA GGGCAATGTT GCGGTGGGGG TGCAGCAGGT GCTGACCTAC
ACGGTAGAGA ACACCGGCAA TGCGACGCTC ACCCTGAGCG GCACGCCCAG CAGTTCGGCG
GCGAGCAATG TGAGCGTGGA CAGTATCTCT GCACCCGGCT CCAGCAGCCT TGCGGCCAGC
GCCAGCACCA CCTTTACGGT GGCCTATACG CCGACCGCGG CAGGGGCGTT TTCCTTTGAG
CTCGATGTGA GCAGCGACGA CGCCGACGAG GGCACCTATG ATCTCACCGT AAGCGGCACG
GCGACGGCGG CGCCTGGGTT CAGCCAGGCG ATTGCGCCGG GGACGATCCT TGCGGATGGG
ACGGCGACGG TGACCTTTAC CATCGACAAC AGCGCCAATG CCACGGCGGC AACGTCACTC
GACTTCAGCA ATAGTCTGCC TGCGGGGGTT GAGGTCGCCG CAACGCCCAA TGCCGCGACC
TCCTGTACCG GTGGCACGCT GACGGCGGTG GCTGGCAGCG GCACGCTCTC CTATACCGGT
GGCACGGTGG GCGCGGGCGC CAGCTGCACG GTGCAGGCGG ATGTGACCGC TGGAACGGAC
GGCAGCTACA GCAACACCAG CGGCGATCTG ACCTCGAGCC TTGGCAATTC CGGCAGCGCC
TCGGCCTCGC TGACGGTGGC CTCGCCAGAG ATCGATCTCC AGCGCCCGGC GGCAACGTCT
CTGGCGGATG GTGACACCGA TGCGCAGGGC AATGTTGCGG TGGGGGTGCA GCAGGTGCTG
ACCTACACGG TAGAGAACAC CGGCAATGCG ACGCTCACCC TGAGCGGCAC GCCCAGCAGT
GCGGCGGCGA GCAATGTGAG CGTGGACAGT ATCTCTGCAC CCGGCTCCAG CAGCCTTGCG
GCCAGCGCCA GCACCACCTT TACGGTGGCC TATACGCCGA CCGCGGCAGG GGCGTTTTCC
TTTGAGCTCG ATGTGAGCAG CGACGACGCC GACGAGGGCA CCTATGATCT CACCGTAAGC
GGCACGGCGA CGGCGGCGCC TGGGTTCAGC CAGGCGATTG CGCCGGGGAC GATCCTTGCG
GATGGGACGG CGACGGTGAC CTTTACCATC GACAACAGCG CCAATGCCAC GGCGGCAACG
TCACTCGACT TCAGCAATAG TCTGCCTGCG GGGGTTGAGG TCGCCGCAAC GCCCAATGCC
GCGACCTCCT GTACCGGTGG CACGCTGACG GCGGTGGCTG GCAGCGGCAC GCTCTCCTAT
ACCGGTGGCA CGGTGGGCGC GGGCGCCAGC TGCACGGTGC AGGCGGATGT GACCGCTGGA
ACGGACGGCA GCTACAGCAA CACCAGCGGC GATCTGACCT CGAGCCTTGG CAATTCCGGC
AGCGCCTCGG CCTCGCTGAC GGTGGCCTCG CCAGAGATCG ATCTCCAGCG CCCGGCGGCA
ACGTCTCTGG CGGATGGTGA CACCGATGCG CAGGGCAATG TTGCGGTGGG GGTGCAGCAG
GTGCTGACCT ACACGGTAGA GAACACCGGC ACTGCGACGC TCACCCTGAG CGGCACGCCC
AGCAGTGCGG CGGCGAGCAA CGTGAGCGTG GACAGTATCT CTGCGCCCGG CTCCAGCAGC
CTTGCAGCCA GCGCCAGCAC CACCTTTACG GTGGCCTATA CGCCCACTGC GGCGGGGGCG
TTTTCCTTTG AACTCGATGT GAGCAGCGAC GACGCCGACG AGGGCACCTA TGATCTCACC
GTAAGCGGCA CGGCAGATGG GAGCGCGGAA ATCGGCGTTG GCTCAGCGAC CGGCGGCAGT
CTTGAGGATG GCGACACCGA TACAATTCCC GGCACCCCAA GTGCGGGTTC GCCGACGGTG
ATAATCTATA CGTTCACCAA CTCTGGCTCC GGCACGCTCA ATATCACGAC GCCGACGGTT
GCTGGAAATA TCTCAAATGA AACCAATGTC GTGGTGAACA GTTTGACTCT TGCGTCCAAC
ACTGTGGCCG GCGGGGGCGG CACCACAACG CTGGAGATCT CGTACACGCC GCAGGTCAGC
GGGGCCTATC GTTTTGATCT GCAGGTCGCC AATGACGATG CAGATGAAAG CCTGTTCAAT
ATTACGGTCG CGGGTTCTGC AAGCGGCCTC CCCGAAATCG AGGTGTCTTC CTCGGCAAGC
GGTGCGTTGA GCGATGGTGA CACCGATAGT ATCGCCACGG TCGCGACGCC CGGCGTCACG
GCGTCCGTCA CCTATACCAT CACCAACAGC GGCACCGATG TCTTGACCCT GGATGCGCCG
TCGGTGGCCA GCAACATCCG CAACCAAAGC AACGTGACGG TGGATCGTCT CAGTCTTGCA
TCAACAACTG TGGCCAGTGG CGGTGGGACA ACCACATTGC GGGTTGACTA TACGGCCACC
GCAGGTGGTG CGTATGGGTT CGACCTGAGC CTGGGATCGG ATGACGCGGA TGAAGACCCG
TTTGACATCG TTGTCAGTGG CACAGCCCAG AGCGTCGCGA GCGCGCTCGC AGCTCAATCC
GGATCGGGTC AGGTCTCTGA AGTGGGCGCG CAGTTTCCTG CGCCACTCGT GGTTTTGGTC
ACAGACAGCA CTGGTACAGG AGTGGCGGGG GTCGATGTGA CGTTTGCCGC CCCTGCAAGC
GGCGCTTCGG TGGTTTTTGC CAGTACGGGC ACCCATACAG AGACGGTGAC CACCGGCTCT
GATGGGACGG CGAGCACCTC TGCCATGACC GCCAATGGAA CGCCCTCCAG CTATGCCGGG
GGATCGACAC TTCAATCTTA TGATGTCACG GCCAGCGCGA CGGGCCTCGC CAGTGTCACC
TTTGCGTTGA CCAATGATCG CGATTCAGAA GCGGATATTC AGAAAACCCA AGAGGTGATA
GCGGCCTTTG TTTCCAATCG CGCCAATGCC ATCGTGTCCA ATCAGCCCGA TCTGGTATCG
CGGCTCAGGC AAGGTGCGCT GGCGGGCCAA CAAGGGCGCA ACGGGTTTGA TCTGCGGGCC
ACATCGGGTG GTCGATCCGC GAACTTCAGC TTTAGTCTGC GCGCGTTGCT GGAGGAGGCT
CGTCGGCGCA ATGACGGCGC GCGTTGGCGC GAGACGCTGC GCCATGCGGA TGCGAGCGCC
GGGCCCGGCG CAGACTCCGC AGCAGACCGT GCGATGGCCA GTCAGGCCTA TGCGCTGCGT
TTTCGCGGAA CCGACCCGGC GCAAGCAGCG CCCGTGGTGA CACCCGTAAT CTCATCAGGC
TGGGATTTTT GGGCCGAGGG GACCTACGCC ATCACGGAGA GTGGCAACTT CGAGAGCCGG
TCAGGCCTGT TCTTTGCGGG TGCAGACTAC CGCTGGTCGG ATCAGGTCCT GCTCGGGGTC
ATGGGGCAGT TGGACATTGC CGATGAGGAC AATGTCGCGG CCGGGACGTC GGCCAGCGGT
ACCGGCTGGA TGGTCGGGCC CTATGTGGTG GTGCGCCTCG ATCAGAACCT CTATCTCGAT
GTTGCGGCCA CCTATGGTCG ATCTTCCAAC ACGGTCAACG CGCTTGGTTT GTTCGAAGAC
GATTTCGATA CTGAACGTTT CTTGTTGCAA GGTGGTTTGA CGGGCGATTT CAAACTGAAT
GCGCGCACCA CGATCAGCCC GTTTGCGCGG CTGACCTACT ACTATGAGAA GCAGGAAAGC
TATACCGATA CGCTCGGCCG GGTGATCCCC TCGCAGGACT TCGAACTTGG TCGGTTCGAG
TTCGGTCCAA AGATTTCATG GGAGATGTAT TTGCAGGAGG GCACGCAATT TTCGCCCTAT
GTGTCTTTTT CCGGCATCTA TGATTTCAAC AAGCTGCAGG GGGCGACACC GACAGATGCG
ACACTGGCCT CTTCTCAGTC GGATCTGCGG GGGCGGCTCG AAGCGGGTGC CACTTTCCTT
GTGCCTGATC GCGGGATCAA AGTTGCCGTC GAGGGGTTTT ATGACGGGAT TGGAACGTCC
GACTTTGAAT CCTATGGTGC GAGCCTGAGT GTCCTGATCC CGTTCTGA
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| Protein sequence | MIEFLCECVV RDKRCAMTPP VSGYKTGRGP IVKRLSGVFF FIMVSLFVAP QAAQASFTSC
PANTSGGDPL TMNLTVDECT LQSGAAVSAL SDDLIQIQIA GGSSTNFFIF DPSANDLRDL
IFSVNNGSPQ GTLDADGGSL SGIDCAAGCT VSGTHGGSPF TFTYTASGGG GSLSSPAEID
DLVSSTGNTV ADGGTDTIAA AIDSGTPTTI TYDVSNSGSG TLSLSGLTQG TPTNASFGAT
SIDAASVASG GTETDAISIT FTPSSTTDGA SFSVPFSFTT NDADDGTDET TFNVTISGTI
NAEAEISDLT SSTTNTVADG GSDAQGTVAS GSAQALIYTI TNSGTADLSV ATASSSSASN
VTVNSIGAPG STTVSAGGGT TQFTVQYTPS AAGAFSFDLS FVNSDADEDP FNFTVSGTAT
AAPGFSQAIA PGTILADGTA TVTFTIDNSA NATAATSLDF SNSLPAGVEV AATPNASTTC
TGGTLTAVAG SGTLSYTGGT VGAGASCTVQ ADVTAGTDGS YSNTSGDLTS SLGNSGSASA
SLTVASPEID LQRPAATSLA DGDTDAQGNV AVGVQQVLTY TVENTGNATL TLSGTPSSSA
ASNVSVDSIS APGSSSLAAS ASTTFTVAYT PTAAGAFSFE LDVSSDDADE GTYDLTVSGT
ATAAPGFSQA IAPGTILADG TATVTFTIDN SANATAATSL DFSNSLPAGV EVAATPNAAT
SCTGGTLTAV AGSGTLSYTG GTVGAGASCT VQADVTAGTD GSYSNTSGDL TSSLGNSGSA
SASLTVASPE IDLQRPAATS LADGDTDAQG NVAVGVQQVL TYTVENTGNA TLTLSGTPSS
AAASNVSVDS ISAPGSSSLA ASASTTFTVA YTPTAAGAFS FELDVSSDDA DEGTYDLTVS
GTATAAPGFS QAIAPGTILA DGTATVTFTI DNSANATAAT SLDFSNSLPA GVEVAATPNA
ATSCTGGTLT AVAGSGTLSY TGGTVGAGAS CTVQADVTAG TDGSYSNTSG DLTSSLGNSG
SASASLTVAS PEIDLQRPAA TSLADGDTDA QGNVAVGVQQ VLTYTVENTG TATLTLSGTP
SSAAASNVSV DSISAPGSSS LAASASTTFT VAYTPTAAGA FSFELDVSSD DADEGTYDLT
VSGTADGSAE IGVGSATGGS LEDGDTDTIP GTPSAGSPTV IIYTFTNSGS GTLNITTPTV
AGNISNETNV VVNSLTLASN TVAGGGGTTT LEISYTPQVS GAYRFDLQVA NDDADESLFN
ITVAGSASGL PEIEVSSSAS GALSDGDTDS IATVATPGVT ASVTYTITNS GTDVLTLDAP
SVASNIRNQS NVTVDRLSLA STTVASGGGT TTLRVDYTAT AGGAYGFDLS LGSDDADEDP
FDIVVSGTAQ SVASALAAQS GSGQVSEVGA QFPAPLVVLV TDSTGTGVAG VDVTFAAPAS
GASVVFASTG THTETVTTGS DGTASTSAMT ANGTPSSYAG GSTLQSYDVT ASATGLASVT
FALTNDRDSE ADIQKTQEVI AAFVSNRANA IVSNQPDLVS RLRQGALAGQ QGRNGFDLRA
TSGGRSANFS FSLRALLEEA RRRNDGARWR ETLRHADASA GPGADSAADR AMASQAYALR
FRGTDPAQAA PVVTPVISSG WDFWAEGTYA ITESGNFESR SGLFFAGADY RWSDQVLLGV
MGQLDIADED NVAAGTSASG TGWMVGPYVV VRLDQNLYLD VAATYGRSSN TVNALGLFED
DFDTERFLLQ GGLTGDFKLN ARTTISPFAR LTYYYEKQES YTDTLGRVIP SQDFELGRFE
FGPKISWEMY LQEGTQFSPY VSFSGIYDFN KLQGATPTDA TLASSQSDLR GRLEAGATFL
VPDRGIKVAV EGFYDGIGTS DFESYGASLS VLIPF
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