| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3139 |
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| Symbol | |
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| ID | 4075011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 117760 |
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| End bp | 118725 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004642 |
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| Product | oligopeptide/dipeptide ABC transporter, ATP-binding protein-like |
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| Protein accession | YP_611375 |
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| Protein GI | 99078117 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.241158 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTTG TTTCTGTCAA GAACCTGAGC CGTGTGTTTG ATGTCTCAAA GCCCTGGCTC
AACCGGGTGA TCGAGCGTGA ACCCAAGGCC TTTTTGACTG CGGTCTCGGA TGTAGATTTC
GAGGTCGAAC CTCAGACCAC CTATGCCTTG GTGGGGGAAT CCGGGTCCGG GAAATCCACC
ATCGGCCGCA TGTTGGTGGG CTTGCTCAAT CCGTCTGACG GCAATGTGGA GATCGAGGGC
GTTGATCTCG CCAATGAGAA AGACGCCGCC AAGGTCGATG CGATCCGCTC TGACATCCAG
ATGATCTTTC AGGACCCCTA TGCCTCGCTC AATCCGCGTT GGCGGGTGCG TGATATCATC
GTTGAACCGG TGGCGGCGCG TGGGGGCAAG ACCGAAGGCC TTGCCGAGAA GCTCCTGGAG
CAGGTGGGGC TTTCGGTCAA AGACGCAGGC AAATTCCCGC ATGAGTTTTC TGGCGGACAG
CGACAGCGGA TCTGTATCGC CCGTGCGCTC GCGTCCGAGC CGCGCCTCAT TGTCTGTGAC
GAGCCCACCT CGGCGCTGGA TGTGTCGGTG CAGTCTCAGG TCTTGAACCT GATGAGCGAC
CTCAAGGACA ACTTTGGCCT CACGTATGTG CTGATCACGC ACGACCTGAC GGTGGTGCAG
CATATGGCGG ACCGGATCGG GGTTCTCTAT CTTGGCCGAT TGGTCGAAGA GGGCGCCCCC
GATGAGCTCT TTGAGCGCCC CAAGCACCCC TACACGCAGA TGCTGCTTGA AGCTGCGCCG
CGGATGGACG GGTTCGGACG CGAAGTGACA CCGCCCGAAG GCGAGATCCC TGATCCGATC
AACCCGCCTT CGGGGTGCGC CTTCCATCCG CGCTGTCCGC TGGCGACGGA TATCTGCAAA
CAGCAGCGCC CCGAGATGCG CAGGCTTGGC ACCACCCGTG TCGCTTGCCA CATGGCGGAA
GGCTAA
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| Protein sequence | MALVSVKNLS RVFDVSKPWL NRVIEREPKA FLTAVSDVDF EVEPQTTYAL VGESGSGKST
IGRMLVGLLN PSDGNVEIEG VDLANEKDAA KVDAIRSDIQ MIFQDPYASL NPRWRVRDII
VEPVAARGGK TEGLAEKLLE QVGLSVKDAG KFPHEFSGGQ RQRICIARAL ASEPRLIVCD
EPTSALDVSV QSQVLNLMSD LKDNFGLTYV LITHDLTVVQ HMADRIGVLY LGRLVEEGAP
DELFERPKHP YTQMLLEAAP RMDGFGREVT PPEGEIPDPI NPPSGCAFHP RCPLATDICK
QQRPEMRRLG TTRVACHMAE G
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