| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3131 |
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| Symbol | |
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| ID | 4075003 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 105191 |
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| End bp | 106237 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638004634 |
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| Product | TRAP dicarboxylate transporter- DctP subunit |
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| Protein accession | YP_611367 |
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| Protein GI | 99078109 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.722243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACTC GCAGAGCACT ACTTGGTGCA GCCACCGCAC TGGCATTTTC CGCAATGGGC
GCAGTGCCCG CCTTCGCGCA GGAGGTGACG CTGAAGCTGC ACCAGTTCCT GCCCGCACAG
GCCAATGTGC CAAAGCTCAT TCTGGATGTC TGGGCAGACA AGATCGAAGA CGCATCGGGC
GATCGTATCA AGATTGACCG CTACCCCTCG ATGCAGCTGG GCGGCAAGCC GCCAGAATTG
ATTGATCAGG TTCAGGACGG CGTTGCCGAT ATCGTCTGGA CCGTGGTGGG CTACACGCCG
GGTCGTTTCC CATCGACCGA AGTGTTTGAG CTGCCCTTTA TGATGACCAA TGCACGTGCC
GCAAGCCACG CCTATTGGGA CATGATGGAA GATCATTGGC TGGACACCGA ATTCAAGGAC
TTCAAGATCC TTGCAGGGTG GGTGCATGGT CCGGGCATCT TCCACACCTC TGATCCGGTC
GAAGTACCAA AGGATCTTGA GGGCATGAAA ATTCGCGGTG GTGGGCGCTC TGTAAACGCC
TTGCTGACCG AGCTGGGCGC AACACCTGTC GGCATGCCTG TGCCGTCCAT TCCCGAAGCG
CTCTCGAAGG GCGTGATTGA TGGGACCACC ATCCCATGGG AGGTGACCAC CGCCCTGAAA
GTGCCGGAAC TTGTTGAAAA CCATACCGAA TTCTCGGGCC GCGCGCTGTA CACGCTGACC
TTTGTTCTGG CGATGAACAA GGAAAAATAC GACAGCCTGC CTGATGACCT GAAGAAGGTG
ATCGACGACA ACTCCGGTGT CGAGATGTCT GTCTTTGCAG GCGGCACGAT GGCAGATTCG
GACATGCCCG CGCGTGAAAA CGCGCTGGAT CTCGGCAACA ATGTGATCAC GCTCGACGCG
GATCAGACGG CCGTGTGGCG CGAGCGCTCT CAGCCGATCT ACGACAAGTG GCTCGCCGAT
ATGTCGGAGC GCGGCATCGA CGGTCAGGCG CTTCTGGATG AGGCGACCAT GCTGATCGAC
AAATATACGC CGCAGTACGA AAACTGA
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| Protein sequence | MTTRRALLGA ATALAFSAMG AVPAFAQEVT LKLHQFLPAQ ANVPKLILDV WADKIEDASG
DRIKIDRYPS MQLGGKPPEL IDQVQDGVAD IVWTVVGYTP GRFPSTEVFE LPFMMTNARA
ASHAYWDMME DHWLDTEFKD FKILAGWVHG PGIFHTSDPV EVPKDLEGMK IRGGGRSVNA
LLTELGATPV GMPVPSIPEA LSKGVIDGTT IPWEVTTALK VPELVENHTE FSGRALYTLT
FVLAMNKEKY DSLPDDLKKV IDDNSGVEMS VFAGGTMADS DMPARENALD LGNNVITLDA
DQTAVWRERS QPIYDKWLAD MSERGIDGQA LLDEATMLID KYTPQYEN
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