| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2987 |
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| Symbol | |
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| ID | 4078017 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 3152051 |
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| End bp | 3153151 |
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| Gene Length | 1101 bp |
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| Protein Length | 366 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638008316 |
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| Product | spermidine/putrescine ABC transporter ATP-binding subunit |
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| Protein accession | YP_614981 |
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| Protein GI | 99082827 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.238574 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.74415 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCCGATG CGTCGAACAC TGACGCGTTC GTGGAATTCG AACGCGTGCA AAAGAGCTAC
GACGGTGAGA CTCTCGTCGT CAAAGATCTG AACCTCACCA TGCCCAAGGG CGAATTCCTG
ACCATGCTTG GGCCGTCCGG GTCCGGCAAG ACGACATGCC TGATGATGCT GGCGGGTTTT
GAAACTGCCA CGCACGGCGA CATTCGTCTG GGCGGGGTAT CGATCAACAA CATCCCACCG
CACAAGCGCG GGATCGGCAT GGTCTTCCAG AACTATGCAT TGTTTCCGCA CATGACGATT
GCCGAGAACC TCAGCTTTCC GCTTGAGGTG CGCAACATGG GCAAGTCCGA GCGTGAGGCA
AAGGTGAAGC GCGCGCTCGA TATGGTCGAG ATGGGCGACT TTGGCGGCCG CCGTCCGGCG
CAGCTGTCCG GTGGTCAGCA ACAGCGCGTG GCACTTGCCC GCGCACTGGT GTTTGAACCG
GAGCTCGTTC TGATGGACGA ACCACTCGGG GCGCTCGACA AGCAGCTGCG TGAGAAGATG
CAGTTCGAGA TTACCCATCT GGCGCACCAG CTGGGGATCA CGACCGTTTA CGTGACCCAC
GACCAGACCG AAGCCCTGAC GATGTCTGAT CGGGTTGCGG TGTTCAACGA TGGTCGCATT
CAGCAGCTTG CGCCGCCGGA TCAGCTCTAT GAGGAGCCTG CAAACAGCTT CGTTGCGCAG
TTCATCGGCG AGAACAACAC GCTCGAAGGC GTGATCAAGG AAATCCGTGA TGGCAGCGCC
CTGGTGCAGC TGGATGGCGG TGAACTTATC GACGCCATGC CGATCAACGT CTCTGAAGTG
GGTCAGCGCA CGCGCGTCTC GATCCGCCCC GAGCGCGTTG AATACAACAA AGAACGCCTG
CAGGAAGGCG CACATACACT CAAGGCAGAG GTGCTGGAGT TCATCTATAT GGGTGACATC
TTCCGTACAC GCCTGCGTGT CGCCGGGAAT GACGAATTCG TCATCAAGAC CCGGAACGCC
CCTGACCAGG TTCGTCTTCA GCCCGGCCAG CAGATCGAAA TCGGTTGGCT GCCCGAAGAC
TGCCGCGCGC TGGACGCGTA A
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| Protein sequence | MADASNTDAF VEFERVQKSY DGETLVVKDL NLTMPKGEFL TMLGPSGSGK TTCLMMLAGF
ETATHGDIRL GGVSINNIPP HKRGIGMVFQ NYALFPHMTI AENLSFPLEV RNMGKSEREA
KVKRALDMVE MGDFGGRRPA QLSGGQQQRV ALARALVFEP ELVLMDEPLG ALDKQLREKM
QFEITHLAHQ LGITTVYVTH DQTEALTMSD RVAVFNDGRI QQLAPPDQLY EEPANSFVAQ
FIGENNTLEG VIKEIRDGSA LVQLDGGELI DAMPINVSEV GQRTRVSIRP ERVEYNKERL
QEGAHTLKAE VLEFIYMGDI FRTRLRVAGN DEFVIKTRNA PDQVRLQPGQ QIEIGWLPED
CRALDA
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