Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2985 |
Symbol | |
ID | 4078015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 3149540 |
End bp | 3150286 |
Gene Length | 747 bp |
Protein Length | 248 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638008314 |
Product | GntR family transcriptional regulator |
Protein accession | YP_614979 |
Protein GI | 99082825 |
COG category | [K] Transcription |
COG ID | [COG1802] Transcriptional regulators |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTTTTCAT CTGCATTCTG TTGGTGCAAG CTGCCCAAAA ATGAGAAGGA TCCAAGCCCG GTGAATGTGC CAAATACGCC ATCTGTTACC CCCGCGGAGG GGGGGCAAAA ACTACCTGCT CACGAGCTGG TCTATCAACG TCTTCGGGCG CAGATTTTGT TTGGTGAGCT GGCGCCGGGC CAGGCGGTCA CCATACAGGG TCTGGTCGAG GCATTGGACA GTGGCATGAC CCCAGTGCGC GAAGCGATCC GCAGGCTGAT CTCGGACGGG GCGCTGGTGT TCCAAGGGAA CCGTCGTGTT TCTGTCCCCG AGCTTCGTGC CGAGGATGTT GATGAGTTAA TTTACGCAAG GAAAACAATG GAGTGTGAGC TTGCCCGTCG CGCAGCCACA CGGATTCCCT CCGCCAGTGT CGATGCGCTT GAGGCGCTTG ATCTGCGCTT GGATACGGCC ATCGCAAATG GCGATGTCGC AGGGTACCTG GGTCTCAATT ACGAATTCCA CAGCATGCTG AACGAATACG CTGATGCCCC CATCCTCGCG GATCTGGCTG ATCGTCTTTG GCTGCGCTTT GGTCCGTCCC TGCGCGTGGT CTGCGGGCGC TTCGGAACCC AGAGCTTTCC TGACCGCCAC AAAGACATCC TTGAAGGGCT GCGTAAAAAA GATGCAGATC TTGTCTCTTT GGCGATGGAG CGGGACGTGT TGCAGGGCAT GGAGCAGGTT CGGGCGGGGC TCACCCCGAT CAACTGA
|
Protein sequence | MFSSAFCWCK LPKNEKDPSP VNVPNTPSVT PAEGGQKLPA HELVYQRLRA QILFGELAPG QAVTIQGLVE ALDSGMTPVR EAIRRLISDG ALVFQGNRRV SVPELRAEDV DELIYARKTM ECELARRAAT RIPSASVDAL EALDLRLDTA IANGDVAGYL GLNYEFHSML NEYADAPILA DLADRLWLRF GPSLRVVCGR FGTQSFPDRH KDILEGLRKK DADLVSLAME RDVLQGMEQV RAGLTPIN
|
| |