| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2920 |
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| Symbol | |
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| ID | 4078598 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 3090662 |
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| End bp | 3092599 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638008249 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_614914 |
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| Protein GI | 99082760 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.922761 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACC GGCCACAGAC CCCGCTCCTT GATCAGATCG CATCGCCTGC TGATCTGAAA
CGCCTCTCCG ATGCGCAGTT GGAGCAGGTC GCTCATGAGC TACGGCAAGA GACCATCTCT
GCGGTCTCCG TCACGGGCGG GCATCTTGGG GCCGGCCTTG GCGTTGTCGA GCTCACCGTG
GCGCTGCACT CCGTGTTTGA CACGCCCAAG GACAAGGTGA TCTGGGACGT CTCGCACCAG
TGCTATCCGC ACAAGATCCT GACCGGCCGC CGCGACCGCA TTCGCACCTT GCGCATGAAG
GATGGTCTGT CGGGGTTCAC GAAGCGCTCC GAGAGCGCTT TTGACCCCTT TGGCGCAGCG
CATAGCTCCA CATCGATCTC TGCTGCGCTG GGGTTCTCTG TTGCGCGGGA TCTGGGCGGA
GTGACCGAAG AAGGCCTCGG TGACGCTATT GCTGTTATCG GCGATGGTGC GATGAGCGCA
GGCATGGCGT TTGAGGCGAT GAACAATGCT GGCCACCTTG GCAAACGCCT GATCGTGATC
CTCAACGACA ATGAGATGTC GATTGCTCCG CCGGTTGGTG CGCTCTCCTC CTATCTCAGC
CGCCTTTATA CAGAGGCGCC GTTTCATGAC CTCAAAGCCG CCGCCAAGGG AGCGGTGTCC
TTGCTGCCCG AGCCCTTCCG CGAAGGCGCC AAACGCGCCA AGGATATGCT GAAGGGCATG
GCTATGGGGG GCACCCTGTT TGAATCCCTG GGCTTTTCTT ACATCGGCCC CATTGATGGG
CATGACATGG ATCAGTTGCT ACCGGTGTTG CGCACCGTGA AGGCGCGCGC CGCTGGCCCA
ATCCTGATCC ATGCCGTTAC CAAAAAGGGC AAAGGCTATC GCCCGGCGGA AGTGGCGCGC
GACAAAGGCC ATGCAACTGC AAAGTTCGAC ATGGTCACTG GCGAGCAGAA AAAAGCACCC
TCAAACGCGC CATCCTACAC GTCAGTTTTT GGGAAAACGC TGACCGATCT GGCGGCACAG
GATTCAAAGA TCTGCGCTGT CACTGCCGCC ATGCCCGATG GCACCGGCCT CAACCTGATG
GCAGAGCGTT ATCCGTCGCG CACGTTTGAT GTGGGCATTG CAGAACAACA TGGTGTGACC
TTTGCCGCGG CTCTGGCAGC TGGCGGGATG AAGCCCTTCT GCGCGATGTA TTCGACCTTC
TTGCAGCGAG GGTACGATCA GGTGGTGCAT GATGTGGCCA TCCAGCGCCT GCCGGTCCGA
TTTGCAATTG ATCGCGCAGG ACTCGTGGGC GCGGATGGCG CCACCCATGC CGGGTCTTTT
GACATCGCCT TCATGGCCAA CCTGCCCGGT ATGGTGGTGA TGGCCGCCGC GGATGAGGCA
GAGCTCAAGC ACATGGTTGC CACTGCCGCG GCCTATGACG CGGGTCCTAT CGCCTTTCGG
TATCCGCGCG GAGAGGGCGA AGGCGTGGAG ATGCCCGAAC AACCCGAAGT CCTGGAAATT
GGCAAGGGCC GCATCATCGA GGAGGGTTCC CGCGTTGCGC TCCTCTCCTT TGGCACCCGT
TTGGGCGAGG TTCGCAAAGC GGCTGAAGCG CTTGCCGCGC GGGGGATCAC CCCAACCGTT
GCAGATGCGC GCTTCGCCAA GCCCTTGGAC CGCGACATGA TCCTCTCCCT CGCGGAGAAA
CACGAGGCGC TCATCACCAT CGAGGAAGGC GCAGTTGGCG GTTTTGGCTC TCATGTCGCA
CAGCTTTTGT CCGAGGAAGC CGTGTTCGAC ACCGGGCTCA AGTTCCGGTC GATGGTCTTG
CCCGACACCT TTATCGATCA GGCCAGCCCC AAAGACATGT ATGACAGCGC AGCGATGAAT
GCAGAGCATA TTGAGGCCAA AGTGCTTGAT GTTCTGGGTG TTGCCCGCCT TGATGAGCGG
CGTCTCCCTG CAAGCTGA
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| Protein sequence | MTDRPQTPLL DQIASPADLK RLSDAQLEQV AHELRQETIS AVSVTGGHLG AGLGVVELTV
ALHSVFDTPK DKVIWDVSHQ CYPHKILTGR RDRIRTLRMK DGLSGFTKRS ESAFDPFGAA
HSSTSISAAL GFSVARDLGG VTEEGLGDAI AVIGDGAMSA GMAFEAMNNA GHLGKRLIVI
LNDNEMSIAP PVGALSSYLS RLYTEAPFHD LKAAAKGAVS LLPEPFREGA KRAKDMLKGM
AMGGTLFESL GFSYIGPIDG HDMDQLLPVL RTVKARAAGP ILIHAVTKKG KGYRPAEVAR
DKGHATAKFD MVTGEQKKAP SNAPSYTSVF GKTLTDLAAQ DSKICAVTAA MPDGTGLNLM
AERYPSRTFD VGIAEQHGVT FAAALAAGGM KPFCAMYSTF LQRGYDQVVH DVAIQRLPVR
FAIDRAGLVG ADGATHAGSF DIAFMANLPG MVVMAAADEA ELKHMVATAA AYDAGPIAFR
YPRGEGEGVE MPEQPEVLEI GKGRIIEEGS RVALLSFGTR LGEVRKAAEA LAARGITPTV
ADARFAKPLD RDMILSLAEK HEALITIEEG AVGGFGSHVA QLLSEEAVFD TGLKFRSMVL
PDTFIDQASP KDMYDSAAMN AEHIEAKVLD VLGVARLDER RLPAS
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