Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2872 |
Symbol | rph |
ID | 4076406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 3040334 |
End bp | 3041047 |
Gene Length | 714 bp |
Protein Length | 237 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 638008201 |
Product | ribonuclease PH |
Protein accession | YP_614866 |
Protein GI | 99082712 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0689] RNase PH |
TIGRFAM ID | [TIGR01966] ribonuclease PH |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.51038 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0590595 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGACCCT CTGGACGTGC CCTGAATGAA ATGCGCAGCG TTTCCATTGA AACCGGCTTT ACCAAACATG CAGAAGGTTC CTGCCTGATC AAGATGGGTG ACACGCACGT TTTGTGTACC GCAACCATCG AAGACCGTGT TCCGCCGTTC ATCAAAGGCT CTGGCCTTGG TTGGGTTACA GCAGAATACG GCATGCTGCC CCGCGCCACC AATACCCGGA TGCGGCGTGA AGCGGCGTCG GGCAAGCAAG GTGGCCGCAC CGTCGAGATC CAGCGTCTCA TTGGACGCGC CCTGCGCGCA GGCGTCGACC GCGTGGCCTT GGGTGAACGT CAGATCACCG TCGACTGCGA CGTGCTCCAG GCCGATGGCG GTACGCGCTG TGCCTCGATC ACCGGTGGTT GGGTTGCGCT GCGTCTGGCT GTCAACAAGC TGATGAAGGC CGGCGATGTT ACCATGGATC CTCTTGTCGA TCCCGTCTCC GCAATCTCCT GCGGGATCTA CGCTGGCCAA CCCGTGCTTG ATCTTGATTA CCCCGAAGAT TCCGAAGCGG GCGTTGACGG CAACTTTATC ATGACTGGAT CCGGCAAACT TATCGAGGTC CAGATGAGCG CCGAGGGGTC TGTTTTCTCT CGCGATCAGA TGAACGAACT AATGGATCTC GCGGCTAAAG GAACATCCGA GCTGGCGGAA ATGCAAAAGG CCGCCTGCGC ATGA
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Protein sequence | MRPSGRALNE MRSVSIETGF TKHAEGSCLI KMGDTHVLCT ATIEDRVPPF IKGSGLGWVT AEYGMLPRAT NTRMRREAAS GKQGGRTVEI QRLIGRALRA GVDRVALGER QITVDCDVLQ ADGGTRCASI TGGWVALRLA VNKLMKAGDV TMDPLVDPVS AISCGIYAGQ PVLDLDYPED SEAGVDGNFI MTGSGKLIEV QMSAEGSVFS RDQMNELMDL AAKGTSELAE MQKAACA
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