| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2785 |
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| Symbol | |
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| ID | 4076553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2945118 |
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| End bp | 2946437 |
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| Gene Length | 1320 bp |
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| Protein Length | 439 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638008110 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_614779 |
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| Protein GI | 99082625 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG4664] TRAP-type mannitol/chloroaromatic compound transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.477736 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCAGG AATATATCGC CATCTTTATG TTTGCATCCA TGATGCTCAT GCTCTTCACC
GGGCAGCGCG TCTTTGGTGC GATTGGGGCT GTGGGGGCCG TTGCTGCGCT TTTGCTGTGG
GGCGTGGGTG GTTATGACAT CCCGTTCTCG GCCGCGATGA AGCTGATGAA ATGGTACCCG
CTGCTGACGC TGCCGATGTT CATTTTTATG GGCTACGTCC TGAGCGAGAG CCGTCTGGCG
GATGATCTCT ACAAGATGTT CCACGTCTGG ATGGGGCCGA TCAATGGCGG GCTTGCCATC
GGCACCATCG GCCTGATGGT TCTGGTCTCT GCCATGAATG GCCTGTCGGT TGCGGGCATG
GCGATTGGTG CCACGATTGC GCTGCCGGAG CTTTTGCGCC GTGGCTACGA CAAGACCATG
GTCACGGGCG TGATCCAGGC TGGCTCGTCT CTGGGCATTC TGGTGCCGCC TTCGGTGGTG
CTGGTGCTCT ATGCCATGAT TGCGCGCCAG CCGGTTGGGC AACTCTGGTT GGCGGGTGTG
ATTCCGGGAC TGATGATGGC GGGACTTTTC ATCATCTACA TCTGGCTGCG CTGCAAGGCG
AACCCGGCCC TTGGTCCGGC AATGGAAGAC GCCCACGAGG TGCCCCGTGC AGAGAAACTG
CGCCTTCTCG GTTCGGGCGC GCTGCCGCTG TTGATCTTTG CGGCGATGAT GGTGCCTTTT
GTGAATGGCT GGACCTCGCT TGTCGAGAGC TCCGCGATTG GGGCGCTCAC GGCGCTGGCT
GCCTCGATTG CAAAGCGTCG CATGACGTGG AAGATCTTTG AATCCTGCAC CAAGAACACG
CTGGCGATCT CATGTATGTT CATGTGGATC ATCCTTGCGG CGCTTGGGTT TGGCGCGGTC
TTCGACGGGC TTGGCGCGGT GAAGGCCATC GACAGCCTCT TTACCGAACA GCTGGGGCTC
AGCCCCTGGG TCATCCTGAT CCTCATGCAG CTCAGCTTCA TCATCATGGG CACCTTCCTG
GATGACACTG CGATGCTTGT GATCGTGGCG CCGCTCTATG TGCCCCTGGT TGCAGCACTT
GGGTTCGATC TGGTCTGGTA TGGCGTCCTC TACACGATCA CGACCCAGAT CGCCTATATG
ACGCCCCCCT TTGGCTACAA CCTGTTCCTG ATGCGCGCCA TGGCGCCGCC AGAAATTTCG
CTGACCGATA TCTACCGTTC GATCGTGCCG TTTGTGGCGA TCATGGTCGT GGCGCTGGCA
ATTATCATGG TGTTCCCGCA GATCGCACTT TGGCTGCCGG AGACCATTTA CGGACAATAA
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| Protein sequence | MSQEYIAIFM FASMMLMLFT GQRVFGAIGA VGAVAALLLW GVGGYDIPFS AAMKLMKWYP
LLTLPMFIFM GYVLSESRLA DDLYKMFHVW MGPINGGLAI GTIGLMVLVS AMNGLSVAGM
AIGATIALPE LLRRGYDKTM VTGVIQAGSS LGILVPPSVV LVLYAMIARQ PVGQLWLAGV
IPGLMMAGLF IIYIWLRCKA NPALGPAMED AHEVPRAEKL RLLGSGALPL LIFAAMMVPF
VNGWTSLVES SAIGALTALA ASIAKRRMTW KIFESCTKNT LAISCMFMWI ILAALGFGAV
FDGLGAVKAI DSLFTEQLGL SPWVILILMQ LSFIIMGTFL DDTAMLVIVA PLYVPLVAAL
GFDLVWYGVL YTITTQIAYM TPPFGYNLFL MRAMAPPEIS LTDIYRSIVP FVAIMVVALA
IIMVFPQIAL WLPETIYGQ
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