| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2750 |
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| Symbol | |
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| ID | 4077622 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2898076 |
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| End bp | 2899119 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638008075 |
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| Product | TRAP dicarboxylate transporter, DctP subunit |
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| Protein accession | YP_614744 |
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| Protein GI | 99082590 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
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| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000216568 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAG TCCTGAAGAC AGCTGCCGTT GGCGCGATCG CCGCCCTGAC CGCAAGCTCC
GCCATGGCCG GTGGCACCAT CCGCTTCGGC CACGACAACA AGACCGATCC GTTTGAAAAC
CCGGCTCACG CCTGTACCGC CGTGTTCCAG AACATCGTCA CCGCAGACAC CAACGGCAGC
GTCACGGTCG AAGTCTTCGG TTCCAACCAG CTTGGCACTG CAGCAGAGCA CGTCCAGCAG
GTGCGCGATG GCGTCATTCA GGCAACACTC ACCTCCACCG GTGCGCTTGC GTCTTATTAT
CCTCGCATCG ACGTGCTGAA CCTGCCGTTT GCATTTGCCA ACAACGCCTC GACCTATTCC
GTGTTCGACG GTGAATTCGG CGAGGCCCTG GCCGCGGACA TCGAAGCCGA GCTCGGCGAT
GTCGTTGTGC TTGGTTTCCC GGACACCGGC GGCTTTTTTG CGGTGACCAA CTCTCAGCGC
CAGATCGCGA ATCTTGAGGA TTTCGACGGC ATCCGCATCC GCACCATGAC CCTGCCGAGC
CACCAGAAGA TCGTGCAGGC GCTTGGGGCC GAGGCCTATC CGCTCAGCTG GGGTGAGGTC
TATTCTGGCC TGCAAACCGG CGTAATTGAC GGTCAGATGA ACCCGGTGCC GATCATCTCC
TTTGCGAACT TCGCAGAGGT GCAAAAGCAC ATGACGCTCA CCAACCACCT GTTCTCGCCC
TACACCTTCA TGGTCAACAA GGCGTTCTAT GACGGTCTGA CCGAAGCGGA GCAGAACACC
CTGCACACCG CCGCCGAAAG CTGCGTCACC GCGAGCCGCG GCCTGTCGCG CATCATCGAG
GCATCCGATC GTGGTCTGGC GGGTCTGATG GACAAGATCG AAGTGACCGC CCTCTCCAGC
GAGCAGCGTG CCGCGATGGC CGGTGCCACA CAGCCCGCGT TTGAGACCCA TGTGGCGGAG
AACCTCGACG CCAAGGCTGG TGAACTCCTG GCGCTCTTCA AATCCGAAGT CGGGAAGGCA
AACGACGCCT CTTATCTCGA CTAA
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| Protein sequence | MKSVLKTAAV GAIAALTASS AMAGGTIRFG HDNKTDPFEN PAHACTAVFQ NIVTADTNGS
VTVEVFGSNQ LGTAAEHVQQ VRDGVIQATL TSTGALASYY PRIDVLNLPF AFANNASTYS
VFDGEFGEAL AADIEAELGD VVVLGFPDTG GFFAVTNSQR QIANLEDFDG IRIRTMTLPS
HQKIVQALGA EAYPLSWGEV YSGLQTGVID GQMNPVPIIS FANFAEVQKH MTLTNHLFSP
YTFMVNKAFY DGLTEAEQNT LHTAAESCVT ASRGLSRIIE ASDRGLAGLM DKIEVTALSS
EQRAAMAGAT QPAFETHVAE NLDAKAGELL ALFKSEVGKA NDASYLD
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