Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2523 |
Symbol | |
ID | 4076525 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2663516 |
End bp | 2664313 |
Gene Length | 798 bp |
Protein Length | 265 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638007847 |
Product | peptidase S49 |
Protein accession | YP_614517 |
Protein GI | 99082363 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.829531 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTTC GATTGCCCTT CACAAAACGC CCGCCCCAAG TGGCGGTGGT GCGCCTGTCC GGAGCCATTG GCATGGCTGG GCGCGGAAGC CTGAACGACT CCACGCTCGC TCCGGTCTTG GAACGCGCTT TTACGAAGGG CAAGCCGAAG GCCGTCGCCC TTGAGATCAA TTCCCCCGGC GGCAGCCCGG TGCAGAGCGC GCTGATCGGG GCGCGTATTC GCCGCTTGGC TGAGGAACGC GACGTTCCTG TGATCGCTTT CGTCGAGGAC GTGGCGGCCT CGGGCGGCTA TTGGCTCGCT GCGGCTGCGG ACGAGATCTA TGCGGATGCG AGCTCGGTTG TTGGGTCGAT CGGCGTGATT TCCGCGGGCT TTGGCGCGCA TGTGTTCTTG GCGCGACAGG GGCTGGAGCG CCGCGTGCAC ACTGCTGGCG AGAGCAAAAG CATGCTCGAT CCTTTCCGCC CGGAAAACGA AGAGGATGTG GCGCGCCTGA AGGGGCTGTT GAACGATATC CACGCTAATT TCATCGATCA TGTGACCGAC CGTCGGGGAG AGAAGCTCTC CACCGAGGAA AAGCTCTTTA CCGGAGAGAT CTGGCTGGCG CGGCGCGCCA AGGAGCTCGG TTTGATCGAC GGCATCGGCC ATCTGAGGCC AGTTCTGCAA GAGCGGTTTG GGGACAAGGT GCGCCTGCGC CGCCACGGTA TCAAAAAGCC CTTCCTGAGC CGGTTTGGCC TGTCCATGGC CGAAGATGCG TTGGCAGCGG TTGAGGAGCG CGCCCAGTTT GCGCGTTTTG GCCTTTGA
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Protein sequence | MSFRLPFTKR PPQVAVVRLS GAIGMAGRGS LNDSTLAPVL ERAFTKGKPK AVALEINSPG GSPVQSALIG ARIRRLAEER DVPVIAFVED VAASGGYWLA AAADEIYADA SSVVGSIGVI SAGFGAHVFL ARQGLERRVH TAGESKSMLD PFRPENEEDV ARLKGLLNDI HANFIDHVTD RRGEKLSTEE KLFTGEIWLA RRAKELGLID GIGHLRPVLQ ERFGDKVRLR RHGIKKPFLS RFGLSMAEDA LAAVEERAQF ARFGL
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