| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2465 |
|---|
| Symbol | |
|---|
| ID | 4076830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2606459 |
|---|
| End bp | 2607031 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 638007789 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_614459 |
|---|
| Protein GI | 99082305 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain
[TIGR01926] uncharacterized peroxidase-related enzyme |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0916178 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGAAAC CAAAGGAGCC AACCGCGCTA GACCTGCCCA TGGCTGATCC ACTTCCCGAC
GAGACACAGA AATATTTCGA GATCTGCCAA GAGAAGCTGG GCATGGTTCC AAATGTGCTC
AAGGCTTATG CCTTTAACGT CGAGAAGCTG AATGCCTTCA CGGCGATGTA TAATGATCTG
ATGCTTGGGG AGAGCCAACT CTCCAAGCTG GAGCGCGAGA TGATCGCGGT TGTGGTTTCC
TCGATCAACA AGTGCTTTTA TTGCCTCGTA GCCCATGGTG CGGCAGTGCG ACAATTGTCC
GGAGATCCGC AATTGGGCGA GATGCTGGTG ATGAACTATC GTGTTGCCCC CTTGGATGCG
CGTCAGCGCG TGATGCTGGA CTTCGCAGCC AAGATGACCC GCGCAAGTGC CGAGATCGAA
GAGGCGGACC GCGAGGTGCT GCGCAGCCAC GGTTTCAACG ATCGTGACAT TTGGGACATT
GCCAATGTCA CCGGCTTCTT CAACATGACA AACCGTGTCG CCAGCGCCAC TGCCATGATG
CCAAACGCAG AATACCACGG GCAGTTTCGG TGA
|
|---|
| Protein sequence | MTKPKEPTAL DLPMADPLPD ETQKYFEICQ EKLGMVPNVL KAYAFNVEKL NAFTAMYNDL
MLGESQLSKL EREMIAVVVS SINKCFYCLV AHGAAVRQLS GDPQLGEMLV MNYRVAPLDA
RQRVMLDFAA KMTRASAEIE EADREVLRSH GFNDRDIWDI ANVTGFFNMT NRVASATAMM
PNAEYHGQFR
|
|---|
| |