| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2351 |
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| Symbol | |
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| ID | 4076470 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2472754 |
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| End bp | 2473725 |
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| Gene Length | 972 bp |
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| Protein Length | 323 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638007673 |
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| Product | type II secretion system protein |
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| Protein accession | YP_614345 |
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| Protein GI | 99082191 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.357093 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCCGT TGACCCTTGT TCAAGATCTC CTGATCCAGC ACCTAGGTGA GTTTGGCCCG
CTGATGGCGG TTGGATTTCT CGGGCTGCTC TTGGTGGTTG TCGCCGCTTT CTTGCTGTTT
AACCAGCCCG AAGACCCGCT GAAGAAATTG CAGCGCAACC TCTCCGCCGA CCAGAACGCC
AAACCCCAGA ATGAGCGTCT GCGCCAGGCC AGCCGCAACG AGCAGCTTCA AAAGTTTGCC
AACTTCCTCG AGCCCCAGGA CGCCGAGGAA CTCTCTGCAA TGCAGTTGAA ACTGCGGCAG
GCGGGATACC AGTCCAAGGA TGCGGTGCGG CTCTTTCACT TCCTGCAGTT TGCACTTGGC
TTGGCGGGTT TGGGCTTTGG CCTGTTTCTC GTTTACGTCC TCAATGCCGA CGTTGAATAT
ACGACCAACC AGCTTGCGAT GCGTGTCCTC GGTCCTGGTG CTGCGGCCTA CTACCTGCCC
CGCTACTGGA TCACGCGCCG CATCGAGGAG CGCAAGCAAG CGATCACCCG CGCCTTCCCG
GACGCGCTTG ATATGATGCT GGTCTGCGTC GAAGCCGGAC AGTCTCTGGA TCAATCCATT
GTACGTGTCG GCAAGGAACT GCAGGCCTCC TACCCCGAGC TTGCAGAAGA ATTCGAGATC
GTCGCCCATG AAATGAAAGC CGGTAAGGAA AAGGACAAGG TTCTGCGCGA CATGGCCACA
CGCTGCGGCG TGCAGGATGT CGCCTCCTTT GTGACGGTGA TGATCCAATC GGCTGCCTTC
GGTACCTCGA TCGCCGATGC GCTCCGGGTT TATGCCGGGG AAATGCGGGA CAAACGCGTG
ATGCGCGCCG AGGAAGCCGC AAACAAGTTG CCAACCAAAA TGACCCTTGC CACAATGGGG
CTGACAGTTC CGCCCTTGCT GGCGATCCTG ATTGCTCCTT CTGTTCAGGG GCTGGGAAAC
ATAGGAAAAT AG
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| Protein sequence | MDPLTLVQDL LIQHLGEFGP LMAVGFLGLL LVVVAAFLLF NQPEDPLKKL QRNLSADQNA
KPQNERLRQA SRNEQLQKFA NFLEPQDAEE LSAMQLKLRQ AGYQSKDAVR LFHFLQFALG
LAGLGFGLFL VYVLNADVEY TTNQLAMRVL GPGAAAYYLP RYWITRRIEE RKQAITRAFP
DALDMMLVCV EAGQSLDQSI VRVGKELQAS YPELAEEFEI VAHEMKAGKE KDKVLRDMAT
RCGVQDVASF VTVMIQSAAF GTSIADALRV YAGEMRDKRV MRAEEAANKL PTKMTLATMG
LTVPPLLAIL IAPSVQGLGN IGK
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