| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2291 |
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| Symbol | |
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| ID | 4078475 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2409675 |
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| End bp | 2411333 |
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| Gene Length | 1659 bp |
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| Protein Length | 552 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638007613 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_614285 |
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| Protein GI | 99082131 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.40554 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAGACG CAGCCATTCA AGGTCACGGC CACGAAGACG AGCGGAGCTT TTTCACCCGC
TGGTTTATGA GCACGAACCA CAAGGATATC GGTATCCTTT ACCTGATCGT TTCGGCGCTC
ACCGGCTTCA TTTCCGTCGC ATTCACCGTC TACATGCGAC TCGAACTTAT GGATCCCGGT
GTGCAGTACA TGTGTCTGGA AGGCTTTGCC GCAGACCCCT GTACGCCGAA TGGCCATCTC
TGGAACGTGC TGATTACAGG CCACGGCGTC TTGATGATGT TCTTCGTCGT CATCCCGGCC
CTGTTCGGCG GGTTTGGCAA CTATTTCATG CCGCTGCAGA TCGGCGCGCC GGATATGGCG
TTCCCGCGGA TGAACAACCT CAGCTTCTGG ATGTATGTTG CAGGCACCGC GCTGGCGGTC
TCCTCGGTCT ATGCGCCGGG CGGCAACAAC CAGCTGGGCG CTGGCGTGGG TTGGGTTCTC
TATCCGCCGC TCTCCGTCAA GGAAGGCGGG ATCGCGATGG ATCTGGCGAT TTTCGCCGTG
CACGTCTCCG GTGCCTCCTC GATCCTGGGC GCGATCAACA TGATCACCAC CTTCCTGAAC
ATGCGTGCCC CCGGCATGAC CCTGTTCAAG GTGCCGCTCT TCAGCTGGTC GATCTTCGTC
ACCTCCTGGC TGATCCTTCT GTCCCTGCCG GTTCTGGCAG GCGCAATCAC CATGCTGCTG
ATGGATCGTA ACTTCGGCTT CACCTTCTTT GATGCCGCAG GCGGCGGGGA CCCGGTTCTC
TACCAGCACA TCCTGTGGTT CTTCGGCCAC CCCGAAGTGT ACATCGTGAT CCTGCCGGGC
TTTGGCATCA TCTCCCACGT GATCGCGACC TTCTCGCGCA AGCCTGTGTT TGGCTACCTG
CCGATGGTCT GGGCGATCAT CGCGATTGGT GTTCTGGGCT TCGTCGTTTG GGCGCACCAC
ATGTACACCG TCGGCATGAG CCTCAACCAG CAGGCCTACT TCATGCTGGC CACCATGGTG
ATCGCCGTGC CCACAGGGGT GAAGGTCTTC TCGTGGATCG CAACCATGTG GGGCGGCTCC
ATCGAGTTCA AAGCCCCCAT GGTCTTTGCT TTCGGCTTCC TGTTCCTGTT CACCGTTGGC
GGTGTGACCG GCGTGGTGCT GTCGCAGGCG GCCGTGGACC GGGCCTATCA TGACACCTAT
TACGTGGTGG CACACTTCCA CTACGTGATG AGCCTTGGTG CGGTGTTTGC GATCTTCTCC
GGCATCTACT TCTACTTTGG TAAGATGACC GGCCGTCAGT ACTCCGAACT GGGCGCACAG
ATTCACTTCT GGATGTTCTT CATCGGTGCA AACCTGACGT TCTTCCCGCA GCACTTCCTG
GGCCGTCAGG GCATGCCGCG TCGCTACATC GACTATCCCG AAGGCTTTGC ATACTGGAAC
AAGATCTCGT CCTATGGCGC GTTCCTGTCC TTTGCCTCCT TCATCTTCTT CTTCGGTGTG
GTGATCTATT CACTGCTGCG TGGCGCGCGT GTGACCCAGA ACAACTACTG GAACGAATAC
GCCGACACGC TGGAGTGGAC CCTGCCCTCT CCGCCGCCGG AGCACACCTT TGAAATCCTG
CCCAAGCAGG AAGACTGGGA CAAAAGCCAC AGCCACTAA
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| Protein sequence | MADAAIQGHG HEDERSFFTR WFMSTNHKDI GILYLIVSAL TGFISVAFTV YMRLELMDPG
VQYMCLEGFA ADPCTPNGHL WNVLITGHGV LMMFFVVIPA LFGGFGNYFM PLQIGAPDMA
FPRMNNLSFW MYVAGTALAV SSVYAPGGNN QLGAGVGWVL YPPLSVKEGG IAMDLAIFAV
HVSGASSILG AINMITTFLN MRAPGMTLFK VPLFSWSIFV TSWLILLSLP VLAGAITMLL
MDRNFGFTFF DAAGGGDPVL YQHILWFFGH PEVYIVILPG FGIISHVIAT FSRKPVFGYL
PMVWAIIAIG VLGFVVWAHH MYTVGMSLNQ QAYFMLATMV IAVPTGVKVF SWIATMWGGS
IEFKAPMVFA FGFLFLFTVG GVTGVVLSQA AVDRAYHDTY YVVAHFHYVM SLGAVFAIFS
GIYFYFGKMT GRQYSELGAQ IHFWMFFIGA NLTFFPQHFL GRQGMPRRYI DYPEGFAYWN
KISSYGAFLS FASFIFFFGV VIYSLLRGAR VTQNNYWNEY ADTLEWTLPS PPPEHTFEIL
PKQEDWDKSH SH
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