| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2285 |
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| Symbol | |
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| ID | 4078469 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2404642 |
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| End bp | 2406678 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638007607 |
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| Product | cytochrome-c oxidase |
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| Protein accession | YP_614279 |
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| Protein GI | 99082125 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
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| TIGRFAM ID | [TIGR02843] cytochrome o ubiquinol oxidase, subunit I |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTACGA TTCCTGCTGC AACAGCAGCC GCTCAGTCCA GTGACGCCCT CAACCAGACC
CATTGGTTCT GGGGCAAGCT CGGCTGGGAC ATCTTTCCCT TCTACGATCC AATCATCTTT
GGCACCTTTA TCGGGACCTG TATCCTTGCG GCCGGGGTGG TCGGCATAGT GCTCTACTAC
CGCCTTCTGC CCTATCTGTG GAACGAGTGG TTCACCACGG TGGACCACAA GAAAATCGGC
ATCATGTACA TGATCCTTGC GGTTGTGATG TTGGTGCGTG GCTTTGCCGA TGCAGTGCTG
ATGCGGCTGC ATCAGGCGCT GGCCTCGGCG GGATATGTGG GCTTCTTGCC CGCTTATCAC
TACGATCAGG TCTTTACCGC GCATGGCGTG ATCATGATCT TCTTCGTGGC GATGCCCTTT
ATCACCGGCT TCATGAACTA TGTGATGCCG CTACAGATCG GGGCGCGCGA CGTGGCCTTT
CCGTTCCTCA ACAACTTCAG CTTCTGGCTG ACGGTGTCGG GTGCGGTGCT GATCATGATC
TCGCTCTTTG TGGGGGAGTT TGCCGCGACC GGCTGGCTGG CCTACGCGCC GCTTTCGGGC
CTGAAGTTCA GCCCCGGCGT CGGCATGGAC TACTACTTGT GGTCGCTCAA CATTGCCGGG
ATCGGCACCA CGCTCTCGGG CATCAACCTC GTTGTGACCC TCGTCAAGAT GCGCGCACCG
GGCATGACCT GGATGAAGCT GCCGATTTTC AGCTGGACCA CGCTCTGTAC CAACATCTTG
ATTGTTGTGA CCTTCCCGGT CCTCACCGCG ACCCTCGCGC TGCTGACTGC GGATCGCTAC
CTCGGCACCC ATTTCTTTAC CAATGAGATG GGCGGCAACC CGATGATGTA TGTGAACCTG
ATCTGGATCT GGGGCCACCC GGAGGTCTAC ATCCTGATCC TGCCGATCTT TGGGATCTTT
TCCGAGATCG TCGCGACCTT CTGCGGCAAA CGCCTCTTTG GCTATGCCTC CATGGTCTAT
GCGACCTGCG TCATCATGGT CCTGAGCTAC ATCGTCTGGC TGCACCACTT CTTTACGATG
GGGGCTGGTG CGGATGTGAA CTCCTTCTTT GGGATCACAA CGATGATCAT CTCGATCCCC
ACGGGGGCCA AGCTCTTCAA CTGGCTCTTC ACCATGTACA AGGGGCGTAT CCGCTTTGAA
CTTCCGATGA TGTGGACCAT CGCCTTTATG CTGACCTTTG TGGTCGGGGG CATGACCGGC
GTGCTTCTGG CGGTGCCGCC TGCGGACTAC GTGCTGCATA ACTCCTTGTT CCTGATTGCA
CATTTCCACA ATGTGATTAT CGGGGGTGTT GTGTTCGGCA TCTTTGCGGG CATCACCTAC
TGGTGGCCCA AGGCCTTTGG CTTCCACCTC GATCCTTTCT GGGGCAAGGT CAGCTTCTGG
GGCTGGGTCG GCGGGTTCTG GGTGGCCTTC ATGCCGCTCT ATCTCCTCGG CCTGATGGGC
GTCACCCGTC GTCTGAGCCA GTTTGAAGAC ACCATCTATG CGGGGTATTT CTTTACCGCC
CTCATCGGCG CGCTGATGAT CGCGGTCGGG CTTCTGGCCT TCCTCGTGCA GATCTTCGTG
TCGATCCGCA ACCGCGAGAA ATTGGCGGTG GGCAATGATC CTTGGGGCGG GCGCACGCTG
GAGTGGTCCA CCACCTCGCC GCCGCCCTAT TACAACTTTG CCTTCACCCC GCGCGTCTAC
GAGCGCGACG CCTGGCACCA TATGAAAACC CATGACGCCA AGGCGCCGAC CTCGGGCTTC
GTACCGATCC ACATGCCGCA CTACACGGCA AGCGGGATCA TTCTGGCGGG GCTGATGACG
GTAATGGGCT TTGCACTGGT CTGGCACATC TGGTGGCTCT CGGCGCTGAT GTTCCTTGCA
AGCCTCGCCT ATGGGATCGC CCATACCTTC AACTATAACC GCGACTATTA CGTGCCCGCC
GAAGAGGTCT CTGAAATCGA GACCGGGCAG AGAACAGTCG CCACGCCTGC GGAGTAA
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| Protein sequence | MATIPAATAA AQSSDALNQT HWFWGKLGWD IFPFYDPIIF GTFIGTCILA AGVVGIVLYY
RLLPYLWNEW FTTVDHKKIG IMYMILAVVM LVRGFADAVL MRLHQALASA GYVGFLPAYH
YDQVFTAHGV IMIFFVAMPF ITGFMNYVMP LQIGARDVAF PFLNNFSFWL TVSGAVLIMI
SLFVGEFAAT GWLAYAPLSG LKFSPGVGMD YYLWSLNIAG IGTTLSGINL VVTLVKMRAP
GMTWMKLPIF SWTTLCTNIL IVVTFPVLTA TLALLTADRY LGTHFFTNEM GGNPMMYVNL
IWIWGHPEVY ILILPIFGIF SEIVATFCGK RLFGYASMVY ATCVIMVLSY IVWLHHFFTM
GAGADVNSFF GITTMIISIP TGAKLFNWLF TMYKGRIRFE LPMMWTIAFM LTFVVGGMTG
VLLAVPPADY VLHNSLFLIA HFHNVIIGGV VFGIFAGITY WWPKAFGFHL DPFWGKVSFW
GWVGGFWVAF MPLYLLGLMG VTRRLSQFED TIYAGYFFTA LIGALMIAVG LLAFLVQIFV
SIRNREKLAV GNDPWGGRTL EWSTTSPPPY YNFAFTPRVY ERDAWHHMKT HDAKAPTSGF
VPIHMPHYTA SGIILAGLMT VMGFALVWHI WWLSALMFLA SLAYGIAHTF NYNRDYYVPA
EEVSEIETGQ RTVATPAE
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