Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2193 |
Symbol | |
ID | 4078184 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2303499 |
End bp | 2304203 |
Gene Length | 705 bp |
Protein Length | 234 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 638007515 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_614187 |
Protein GI | 99082033 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.381108 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAGTAG AAAAAGTAGC TCTGATTACG GCGGGTGGCA GCGGCATGGG CGCGAACGCT GCGCGCAAAT TGGCAGATGA TGGGTTCAAG GTTGGCATCC TGTCTTCGTC TGGCAAGGGC GAAGCGCTTG GCGGTGAACT TGGCGGCTTT GGCGTAACGG GCTCCAATCT TGATGGAGAA GCGCTGAACG AATTGGTCGA GGGTGCGAAG GATCGTTGGG GCCGCATTGA TGTCTTGGTG AACTCTGCTG GCCACGGACC AAAAGGTCCG GTTCTCGAGA TCAGTGACGA GGATTGGCAT CAAGGAATGG AAGTCTACCT GATGAACGTT ATCCGTCCGA CAAGGCTGAT CACACCTGTG ATGCAAGCGC AGGGCGGCGG GGCGATCATC AACATCTCAA CCTTCGCGGC ATTCGAACCC GATCCCCTTT TTCCAACGTC TGGCGTCTTC CGGGCCGGAC TTGCCGCATT CACAAAGCTC TACTCGGATA AGTATGCATC AGAAAACATT CGCATGAACA ACGTCCTTCC GGGTTTCATA GACAGCCTGC CTGAGACCGA AGACCGCAAA GCACGTATTC CAATGGGACG TTACGGTTTC GCCTCGGAGG TGTCTTCTCT CATTTCGTGG CTCGCCTCGG AAAATGGTGG CTACATGACG GGACAAAACC TGTGTATCGA CGGAGGGTTA ACCCGTGCCG TCTGA
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Protein sequence | MTVEKVALIT AGGSGMGANA ARKLADDGFK VGILSSSGKG EALGGELGGF GVTGSNLDGE ALNELVEGAK DRWGRIDVLV NSAGHGPKGP VLEISDEDWH QGMEVYLMNV IRPTRLITPV MQAQGGGAII NISTFAAFEP DPLFPTSGVF RAGLAAFTKL YSDKYASENI RMNNVLPGFI DSLPETEDRK ARIPMGRYGF ASEVSSLISW LASENGGYMT GQNLCIDGGL TRAV
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