Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2177 |
Symbol | |
ID | 4076776 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2288888 |
End bp | 2289514 |
Gene Length | 627 bp |
Protein Length | 208 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638007499 |
Product | RNA polymerase sigma factor |
Protein accession | YP_614171 |
Protein GI | 99082017 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0116551 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCCG AGACGGGCGT TGATCGTGCG CATGGCGCGA CGCGGGCCAC CTTTGTGGAG CCCGCGCTCA GCGACGAAGC CTTGCTGATC CGCTTCGGCA ATGGCGATCC TTCGGCGGCG ACAGAGCTGA CCCGGAGGCT TGCGCCGCGG GTGCTGTCAC TGGCGACACG GGTATTGGGC AATCGCGCAG AGGCCGAAGA CGTGACCCAG GAAGCGATGC TCAGGCTGTG GAAAATCGCG CCCGACTGGC GAAATGGCGA GGCCCGCGTC TCTACTTGGC TCTATCGTGT GGGGATGAAT CTTTGCATCG ACCACAAACG CCGGGTTCGT GGCGGGCATG TGGATCTGGA CGCGATCCCG GAACCTCCTG ACCCTGCGGC CGGGGCGGCG GAGGCTCTTC AGGAGGGGGC GCGCCGGGAC GCGCTGCAAG ATGCGCTGAT GACCTTGCCC GAGCGGCAAC GTCAGGCCGT GGTGCTGCGC CACATAGAGG AACTGACGAA CCCGGAAATC GCCGGGGTCA TGGAGATCAG CGTGGAGGCC GTGGAAAGCC TGACCGCACG GGGCAAACGC GCTTTGGCCG CAGCATTGGC GGGTCGGCGC GAGGAATTGG GGTATCAAGA TGGGTAA
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Protein sequence | MTAETGVDRA HGATRATFVE PALSDEALLI RFGNGDPSAA TELTRRLAPR VLSLATRVLG NRAEAEDVTQ EAMLRLWKIA PDWRNGEARV STWLYRVGMN LCIDHKRRVR GGHVDLDAIP EPPDPAAGAA EALQEGARRD ALQDALMTLP ERQRQAVVLR HIEELTNPEI AGVMEISVEA VESLTARGKR ALAAALAGRR EELGYQDG
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