| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1997 |
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| Symbol | |
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| ID | 4077454 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2101188 |
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| End bp | 2102966 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638007312 |
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| Product | periplasmic sensor signal transduction histidine kinase |
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| Protein accession | YP_613991 |
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| Protein GI | 99081837 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACATA CAGCCCCTCA CCATAAGAAG ATCTCCACCC TGCACATGCT CGTCATTGGC
CTGTCTCTCG CCATGACAAT CGGCGCCTGG CTCTATTCGA AACACCAAGT GGACAAGCAG
ATCGAGGCCC GTTTCATCGC CTCGCGCGAT CGCACCGTCG ACCTCATCGT GGATCGCATG
TCACGCTACG AGGATGCCTT GTGGTCCGGC GTCGCGCACG CCCGTTCCCT GAGCGGTGAG
CTGAACGCGC GCGACTGGCA TACGTTTTCC GAAACGCTTC ACATCGAAGA GAAATACCCC
GGTGTGAACG GTATTGGCTT CATTCACAAT GTAGAGCGCA CTGACCTGCC CGCCTACCAC
GAGGCAAGGA GCAGCGAAGG GCGGCCGATC CAAATCTATC CGGAGCATGA TCTCGAGTAC
CTGCTGCCAA TCACCTACAT CGAGCCCGAA GCCGCCAACG CGGCTGCAAT CGGTCTGGAT
GTGGCGCATG AAACCAACCG GCGCACGGGT CTGCTTGCAA GTCGCGACAG CGGCAGCGCG
CGCATCACCG GGCCGATTGT GCTTGTGCAG GACAGCGGCA ATACACCCGG TTTTCTGTTC
TACACCCCGC TCTACGCAGG CCAAATGCCC ACCACCGTCG CCGAGCGCCG GGAGCGGTTC
CTTGGCGTTG TCTATGCGCC CTTTGTGGTG CGCAAGCTTG TGGAGGGCTT GCTTTCGAAG
GATCTGCGGG ATGTACGCTT CAGCCTCAGC GATGGCGAGG CGGTGATCTA TGACGAACAC
GGCCCCGACG AGCCGCTGTA TGACGTGGAC CCGATGTTCA CCGACACGGT CGTGGTCGAC
ATGTACGGGC GAAAGTGGAC GGTCAATCTG CGTACAAACC TGGCCTTTCG CGCACAGAAC
AGCTCTGCAC AGCCCAGCCT GATCCTTGCC GGCGGACTGG TCATCGAAAT CCTGGTGATC
TCGCTGCTGG TGATGCTCTC GCGCTCGACC AAGCAGGCGC ATAGTCTCGC GCGCGACCTC
ACCGCAGAAC TGCGTGCCAA AACCAAACAC CTCGAGAAGG CCAATGCCGA AATCGAACAA
TTTGTCTATG TGGCATCGCA TGACCTGAAG ACCCCCGCGC GCGGCATCGG GTTCCTTGTG
GATGTGATCG AAGAAGAGCT CGAGGACGTG CTCAAATCCG CCCAAAATCG CGGCGAACTG
CAGATGCAGC TCGATATGAT CCGCGACCGC GTGGCGCGTA TGAATGATCT CACCAAGGGC
ATCATGGAAT TTTCGCGCGT CGGCCACTAT GGCTCCGAGG GAGAGCCGCG CTTGCCTGTA
AGCAACCTGA TCGAGGACTG CGTGGCTGAT TTTGAGGTTG ATCCCAAGCA AGTCCATCTG
GCCTCGGATG TGAGTGAAAT CGCCTGCGAC AGCCATAACT TCCGGCGGGT TCTGGAGAAC
CTGATCGGCA ACGCTTTCAA ATACCACCCT CACCCGCGCG CCGCCAAAGT CGAGGTGGCA
ATCAAGGATC GCGGAGATCG CCTGACAGTG AGCGTCAAGG ACGACGGCAA CGGCATTGCG
CCGGAGTTTC ACGACAAGAT CTTTGACGTC TTTCAAACCC TACGCAAGGG AACCGAACCC
GAAAGCACCG GCATCGGTCT GGCGATTGTG AAAAAGGCGA TCCAGCGGCA CGGGTTTGAT
ATCACAGTAA CCTCATCCGA GGGCCATGGC GCAGAATTCT CATTCTGTTG GCCCAAAGAC
CGCAGCCAGA GCAGCATGGA CTTGGAGAAC GTAGCCTGA
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| Protein sequence | MAHTAPHHKK ISTLHMLVIG LSLAMTIGAW LYSKHQVDKQ IEARFIASRD RTVDLIVDRM
SRYEDALWSG VAHARSLSGE LNARDWHTFS ETLHIEEKYP GVNGIGFIHN VERTDLPAYH
EARSSEGRPI QIYPEHDLEY LLPITYIEPE AANAAAIGLD VAHETNRRTG LLASRDSGSA
RITGPIVLVQ DSGNTPGFLF YTPLYAGQMP TTVAERRERF LGVVYAPFVV RKLVEGLLSK
DLRDVRFSLS DGEAVIYDEH GPDEPLYDVD PMFTDTVVVD MYGRKWTVNL RTNLAFRAQN
SSAQPSLILA GGLVIEILVI SLLVMLSRST KQAHSLARDL TAELRAKTKH LEKANAEIEQ
FVYVASHDLK TPARGIGFLV DVIEEELEDV LKSAQNRGEL QMQLDMIRDR VARMNDLTKG
IMEFSRVGHY GSEGEPRLPV SNLIEDCVAD FEVDPKQVHL ASDVSEIACD SHNFRRVLEN
LIGNAFKYHP HPRAAKVEVA IKDRGDRLTV SVKDDGNGIA PEFHDKIFDV FQTLRKGTEP
ESTGIGLAIV KKAIQRHGFD ITVTSSEGHG AEFSFCWPKD RSQSSMDLEN VA
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