| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1991 |
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| Symbol | |
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| ID | 4077175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2096154 |
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| End bp | 2097575 |
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| Gene Length | 1422 bp |
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| Protein Length | 473 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638007306 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_613985 |
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| Protein GI | 99081831 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.533391 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAAAAC TATTGAAATC AAAGCGTATT AAGGCTTTTG CGACAATCGG CGTCCTCGCC
ACGGCCGTCT TGAGCGCCCC GCAGGCGCGT GCGGATAATG TCACCGACGC GATGATCGGC
GCCTATACAA GCAGCGGCCT TCTGGAACAG AACCGAGCCC TGCTGCGTGC CGCAGACGAA
GGGGTTGCGG CCACGGTTGC GCGGCTGCGT CCGGTGATTA CAGCCACCCT CGCGATTGCA
CGCGATTACA ACCGCACGGG CTTTGGGACT GGGGGCGCGC GCTCCAGCCA CAGCACGGGT
GCCTCCTTGC GCCTCGGCAT GGAGTGGTTG CTCTTTGACA ATGGTGCCAC GCAGCTCGAT
CAGGCAGCGG CGCAGGAAAC CGTCCTTGCA ACCCGGCAGA CCCTTCTGGA CGTGGAGCAG
CAGGTGCTGT TCGCGGCTGT GCAGGCTTAT GTCAACGTCC TGACTCAGCA GGATATCGTT
GCGCTGCGTC AGAACAACCT GCGCTTGCTG CAGGAAGAGC TGCGCGCTGC CAACGACCGT
TTCGAAGTGG GCGAAGTGAC GCGCACCGAT GTCGCTCTGG CCGAAAGCCG GGTGGCTGAG
GCACGTGCCA ACCTGACCGA TGCACGCGGT GCCTTGCTGA CCGCACGCGC CACCTATGAA
GAGGTGGTCG GACGCGCGCC GGGGGCGGTG GCGTCCTATC CGCCGTTGCC GCGCCGCGCG
GCATCGCTTT CGGATGCACA GGCGCTGGCG TTGCGCAGCC ATCCGAGCCT GCGTGCGCAG
CAGCATTCGG TGCGGGCGGC GCAGCTTACC GCCGACAGCT CTTTGCGCGA CATGGGCCCC
AATGTGAAAT TCACCGCCAG TGCGACTCAT AGCGAGGTGC ACAGCAGCGA CTCCAATGCT
GACAACTTTG ATCTCGGCCT TTCGCTCAAC CAGACCCTTT ATGCGGGTGG CGCTCTGGCT
GCCGCGCGCC GGGCGGATCT GGCACGCCTC GATGCAGAGC GCGGCGCTTT GATTTCGATT
CAGCGCAGCA TCTCCAGCAG CGCAGCAAGT GCCTATACCG CGTTTGAAAC CGCCGCCGCG
AGCCTTGTGT CCTCGAACCA GCGCGTGCGC GCAGCGCAGG TCGCTTTTGA CGGGATCCGC
GAGGAAGCCA CGCTGGGATC GCGCACCACG CTTGATGTGC TTCAGGCCGA GCAGGAGCTT
CTGGATGCAC AAACGGCCCG TTTGTCGGCG CGTGCCAATC AGGCGCTGGC GGCTTATCAG
CTGTTGCAGG CGCAGGGTTT GTTGACGGCT GAGAACCTCA ATCTCGCGGT CGAGCGATAT
GACCCCGAAC TCTATCACAA CCAGGTGCGT TCGGCTCCGG CCTTTGTCAC CAAGCGTGGG
CAGGATCTGG ACCGCGTGCT CAAGGCTCTG AGAAAAAACT GA
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| Protein sequence | MQKLLKSKRI KAFATIGVLA TAVLSAPQAR ADNVTDAMIG AYTSSGLLEQ NRALLRAADE
GVAATVARLR PVITATLAIA RDYNRTGFGT GGARSSHSTG ASLRLGMEWL LFDNGATQLD
QAAAQETVLA TRQTLLDVEQ QVLFAAVQAY VNVLTQQDIV ALRQNNLRLL QEELRAANDR
FEVGEVTRTD VALAESRVAE ARANLTDARG ALLTARATYE EVVGRAPGAV ASYPPLPRRA
ASLSDAQALA LRSHPSLRAQ QHSVRAAQLT ADSSLRDMGP NVKFTASATH SEVHSSDSNA
DNFDLGLSLN QTLYAGGALA AARRADLARL DAERGALISI QRSISSSAAS AYTAFETAAA
SLVSSNQRVR AAQVAFDGIR EEATLGSRTT LDVLQAEQEL LDAQTARLSA RANQALAAYQ
LLQAQGLLTA ENLNLAVERY DPELYHNQVR SAPAFVTKRG QDLDRVLKAL RKN
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