| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1895 |
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| Symbol | |
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| ID | 4077392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1995323 |
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| End bp | 1997098 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638007211 |
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| Product | TrkA-C |
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| Protein accession | YP_613890 |
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| Protein GI | 99081736 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG0471] Di- and tricarboxylate transporters |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.716075 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.940085 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTGG ATCAAACCCT GCTTTTTGGC CTCTTTGCGA CCGTGTTCGG CCTGCTGCTC
TGGGGCAGGT TTCGCTATGA TCTGGTGGCC TTTGGCGCAC TGATGGTGGC GGTGGTCCTG
GGGCTGGTGA AGGCCGAAGA TGCCTTTGCG GGCTTTGGTC ATCCGGCCAC CCTGGTGGTG
GCGCTGGTGC TTGTGGTGTC GGCCGGGCTG GTGAAATCCG GGGCCGTGCA TCTTATCACC
CGGACACTGG TGGACCAGAG CCGGGCGCTT GGCGCGCATA TTGCGCTGAT GGGCAGCGTG
GGCGCGGTCT TGTCGGCCTT TATGAACAAT GTGGCCGCTC TTGCGCTCTT GATGCCAGTG
GACATCCAGA CGGCACGCAA GGCAGGGCGC ACGCCAGGTC AGAGCCTCAT GCCCTTGTCC
TTTGCCACCA TTCTTGGCGG CATGGCGACG CTGATCGGCA CCCCGCCCAA TATCATCATC
GCCAGCATCC GCCATGACAC GTTGGGCGAA CCGTTCAAGA TGTTCGATTT TGCCCCCGTG
GGGTTGGCGG CGGCAGCGGC GGGGCTGGCC TTTGTGGCGC TGGTGGGCTG GCGGCTGATC
CCGGATCGTT CGGGCGCGGC GGGCGCCACC GAGAGCCAGC TTGCCCCCTA TATCGCAGAG
CTGACAGTGC CAGAAGACAG CGATCTGATT GGCCAGCGGC TTGGCAGTCT GGATCCGGAA
GCCGAGAAGG CCGATGTGGC CATCCTGGGG CTGATCCGCG GCGGGCAACG TCGCTATGGC
CGGGCAGCGG GGGCGCTACT GCAGGCGGGC GATACCATCG TGCTGGAGGC CACCCCGGAT
GCGCTGGATG AATTCCGCGC CACGCTCAAA CTCGATTTTT CCGATGCCGC GCGCGAAGAA
AAGCTGAAGG CTGCGGGCGA AGGGCTCGAG CTGATCGAGG TGGTGGTGCC AGAATATTCC
CGTATTGCGG GCCGCAGCGC GCAGGGCGTC GGACTCGCCT GGCGCCAGAG CGCGGTACTC
CTTGGCATTG CGCGTCAGGG CGAGCGGCTG ACCAAACATT TGCGCCAGAC CGAAGTGGCG
CCCGGAGACA TCCTGCTGAT CCTCTGCCCG CGCGATCGCG GGGCAGAGGT TGCAGAGTGG
TTGGGCTGTC TGCCACTCGC GGCACGCGGT CTTTCGGTGA CGGCCAATGA CAAGACCTGG
TGGGCAATCG GGCTCTTTGC CGCGGCGGTT CTGGCGGCGT CGGTGGGGCT GGTCTATCTG
CCGGTGGCGC TGGGACTGGT TGCGATTGGC TATGTCTTGC TAAAGATCCT GCCTGTGGCA
GAGATCTATG ACCATGTGGA ATGGCCTGTG GTGGTGCTCT TGGGGTCGAT GATCCCGCTG
GGACAAGCAC TCGAAACGTC AGGCGGCACC GAGCTTCTGG CCCATGGGCT TGTTGAGCTG
ACCACAGGGC TGCCCGCCTG GGCGATCCTG ACAGTGCTGA TGGTGGTGAC AATGACGCTG
TCGGATGTGC TCAACAACAC GGCGACCGCG ATTGTGGCGG CGCCGGTGGG GATCTCCATG
GCTCAGGCGC TGAATGTGTC GCCCGACCCC TTCCTGATGG CGGTTGCGGT GGCGGCCTCG
GCGGCTTTCC TCACCCCCAT CGGCCATAAG AACAACACGT TGGTGCTTGG CCCCGGCGGC
TATAAGTTCG GCGATTACTG GCGGATGGGG CTGCCGCTCG AGATCCTTGT GATCGCGGTC
TCGATCCCAG CGATCCTGTT CTTCTGGCCC CTCTGA
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| Protein sequence | MTLDQTLLFG LFATVFGLLL WGRFRYDLVA FGALMVAVVL GLVKAEDAFA GFGHPATLVV
ALVLVVSAGL VKSGAVHLIT RTLVDQSRAL GAHIALMGSV GAVLSAFMNN VAALALLMPV
DIQTARKAGR TPGQSLMPLS FATILGGMAT LIGTPPNIII ASIRHDTLGE PFKMFDFAPV
GLAAAAAGLA FVALVGWRLI PDRSGAAGAT ESQLAPYIAE LTVPEDSDLI GQRLGSLDPE
AEKADVAILG LIRGGQRRYG RAAGALLQAG DTIVLEATPD ALDEFRATLK LDFSDAAREE
KLKAAGEGLE LIEVVVPEYS RIAGRSAQGV GLAWRQSAVL LGIARQGERL TKHLRQTEVA
PGDILLILCP RDRGAEVAEW LGCLPLAARG LSVTANDKTW WAIGLFAAAV LAASVGLVYL
PVALGLVAIG YVLLKILPVA EIYDHVEWPV VVLLGSMIPL GQALETSGGT ELLAHGLVEL
TTGLPAWAIL TVLMVVTMTL SDVLNNTATA IVAAPVGISM AQALNVSPDP FLMAVAVAAS
AAFLTPIGHK NNTLVLGPGG YKFGDYWRMG LPLEILVIAV SIPAILFFWP L
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