| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1879 |
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| Symbol | |
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| ID | 4077376 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1978118 |
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| End bp | 1979593 |
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| Gene Length | 1476 bp |
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| Protein Length | 491 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638007195 |
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| Product | XRE family transcriptional regulator |
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| Protein accession | YP_613874 |
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| Protein GI | 99081720 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3800] Predicted transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.639599 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCACGG TTATAACCAG TGCGGCTTGC CAGAGTGAGT TTGCAGTTAT ACAAATGAAC
TCAGCTCAAT TTGCAAAGGC AAGCCACATG GCCACCCAAA AGCTCTATGC CGGGGCGAAG
CTGCGCGAGA TGCGCAATCG GATCGGCCTC ACGCAAAAGG ACTTTGCCGC CAAGCTCGGC
GTCTCGCTGC CCTATCTGAA CCAGATGGAG AACAACAACC GGCCTGTGTC CACCACGGTC
GTCCTGGCGC TGGCGCAGGA GTTCGGGCTG GATGTGACAG AGCTGTCGTC TGGAGATAGC
GAACGGTTGA TCTCTGACAT GCGCGAGGCC ATGGCCGATC CGGTCTTTGC CGATGATGTG
CCGCCCCTGG CCGATCTGCG CCTCACTGCG TCAAACGCCC CCGCCCTCGC CCGCGCTTTC
CTGAGCCTGC ACCGCGCTTA CCGTCAAACC CACGAGCGGC TTGCCTCGCT GGATGAGGCG
CTGGGGCGTG CCGATGCGCG CATTCAGGCC AGCCCCTGGG AAGAGGTGCG CGACTTCTTT
CATTACTGCG ACAACTATAT CGACGCCGTG GACCGCGCGG CCGAGCGGTT CTCGGGCAGT
GGCGACACCC GCCAAAACGC GGAGACCGCC CTGCAAGAGA TCGGCGTGAC CCTGACCCTG
CGCGACATGG AGGGGTTGCG CGCCTATGAT CCCGACACCA AAGTGCTGGC GCTGTCGCAT
CGCTCCGCGC CGCAAACGCG GCTGTTTCAG ATGCTCTTGC AACTGGCGCT TTTGCGCTAC
GGCGATCTTC TGGAGGCGAC GCTCGATTTT GCAAAATTCC AGACCGATGA GGCCCGTTCG
ATTGCAAAGA TCGGCCTTGC AAATTACTTC GCCGGCGCAG CCCTGATGCC CTACACAAGG
TTTCTGGAGG CGGCACAGGC CTGCCGGCAT GACCTGGAGC TGTTGTCGAT CCGCTTTGGG
GCCTCGATCG AGCAGGTGGC GCATCGCCTG TCGACCCTGC AACGTCCCGG CGCCAAGGGC
ATTCCGTTTT TCTTTGTGCG CGTCGATCAG GCGGGCACGA TCACCAAGCG CCATTCGGCC
ACACGGTTGC AGTTTGCCCG TTTTGGCGGC GCGTGTCCTT TGTGGAACGT CCACCGCGCC
TTTGAAACAC CGGGGCGGTT TTTGCGACAG CTCGCCGAGA CTCCCGACGG GGTGCGCTAT
ATCTCGCTGG CGCGGGATGT CTCCAAACCG GGCGGATCCT TCGGCGCACC GGTGCGGCGC
TATGCGATCT CGCTGGGCTG CGAAGTCAGC CACGCGGATG CGTTGGTCTT TGCGGATGGG
CTTGATGTGA CGCAGGCCTC GGCCTTTGAA CCCATCGGCA TCTCCTGCCG GATTTGCGAG
CGCCAGCATT GTCACCAGCG CTCGGTGCCG CCGCTGGAGC GACGACTTTC GGTGGACACC
AACGAGCGCA GCGTGTTGCC CTACCGGGTC AATTGA
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| Protein sequence | MGTVITSAAC QSEFAVIQMN SAQFAKASHM ATQKLYAGAK LREMRNRIGL TQKDFAAKLG
VSLPYLNQME NNNRPVSTTV VLALAQEFGL DVTELSSGDS ERLISDMREA MADPVFADDV
PPLADLRLTA SNAPALARAF LSLHRAYRQT HERLASLDEA LGRADARIQA SPWEEVRDFF
HYCDNYIDAV DRAAERFSGS GDTRQNAETA LQEIGVTLTL RDMEGLRAYD PDTKVLALSH
RSAPQTRLFQ MLLQLALLRY GDLLEATLDF AKFQTDEARS IAKIGLANYF AGAALMPYTR
FLEAAQACRH DLELLSIRFG ASIEQVAHRL STLQRPGAKG IPFFFVRVDQ AGTITKRHSA
TRLQFARFGG ACPLWNVHRA FETPGRFLRQ LAETPDGVRY ISLARDVSKP GGSFGAPVRR
YAISLGCEVS HADALVFADG LDVTQASAFE PIGISCRICE RQHCHQRSVP PLERRLSVDT
NERSVLPYRV N
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