Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1840 |
Symbol | |
ID | 4077865 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1941291 |
End bp | 1942529 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638007156 |
Product | DegT/DnrJ/EryC1/StrS aminotransferase |
Protein accession | YP_613835 |
Protein GI | 99081681 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.254926 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.555977 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAGCAGG CATCCTCTCC ACAGGTCCCG AACACCGAGG TTCCAAACGT GCACCAGGGC GAACCGATCC CTGAGGCGGC GCGTGACGCG ATCGAGGCCT TGATGCAATC AGGCGATCTG TTTCGCTATA CCGCGCCGCA GGATGCGCCG GTCTCGCTCC TTGAGACAGA GTTTGCCGAG CTGTTGGGGT CGAAATATGC GCTGGCGGTG TCGTCCTGTT CGGCGGCGCT GTTCTTGTCG CTGAAGGCGC TGGATCTGCC CCGGGATGCG CGGGTCTTGA TCCCCGGCTT TACCTTTGCG GCGGTGCCGT CATCGGTGGT CCATGCGGAC TGTGTGCCGG TGCTTTGCGA GGTCGGAGAG AACTACCGCA TCAACATGGC CGATTTCGAG GCCAAGCTCG ATCAGGACAT CGCGGCGGTG ATCATCTCAC ACATGCGCGG GCACACCTCG GACATGGACG CGATCATGGC GCTCTGCGAG GCGCGCGACA TTCCCGTAGT CGAGGATGCG GCCCATTCGC TTGGTACCAC CTGGCACGGT CGCAACATCG GCACGATCGG CAAAGTGGGC TGTTTCTCGT TTCAGTCCTA CAAGATGCTG AACGCCGGCG AAGGCGGGAT CCTCGTGACC AATGACGCCG ATGTGGTGGC GCGCGCGGTG ATCATGTCCG GCGCCTACGA GCACAACTGG CAGAAACACA AACCCGCCCG TGGCGACAAT GGCACCGCGC TGGCAGAGGC TTTTGGCCGC TGGCAGAACC TGCTGCCGCT TTATAACCTG CGGATGAGCA ACCTTTCGGC CGCGGTCATT CGCCCCCAGA TCCCCGAGCT CGCGCGCCGG GTCGCGGACG GGCTGAAGAA CCACGACTAT GTGGCGGCAA AACTGAATGC GCATGCCAAT TTCCACGTCC CCGCGCCGCT GGCGCCGGAG CGGCGCGCCC CGGACTCGAT CCAGTTCAAC CTGGTGGGCA TGGATGATGC GCAGATCGAG GCCTTTGCAA AGGCCACCGC CGACAAAGGT GTGAAGGTTC AGATCTTTGG CCGCTCGACG GACAACGCGC GCGCGTTCTG GAACTGGCAG TTCCTCAAGG ATCTGCCAGA GTTGCCTGAA ACCCGCGCCA TGCTGATGCG CGCCTGCGAT GTGCGCCTGC CGGTCCGGTT GACGCAAGAC GAGTTGGACG TGATCGCCCA AATCCTGCTG TCCTCGGTCG AGGAAACCAT GGCCCGCGCC GCCGCCTGA
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Protein sequence | MKQASSPQVP NTEVPNVHQG EPIPEAARDA IEALMQSGDL FRYTAPQDAP VSLLETEFAE LLGSKYALAV SSCSAALFLS LKALDLPRDA RVLIPGFTFA AVPSSVVHAD CVPVLCEVGE NYRINMADFE AKLDQDIAAV IISHMRGHTS DMDAIMALCE ARDIPVVEDA AHSLGTTWHG RNIGTIGKVG CFSFQSYKML NAGEGGILVT NDADVVARAV IMSGAYEHNW QKHKPARGDN GTALAEAFGR WQNLLPLYNL RMSNLSAAVI RPQIPELARR VADGLKNHDY VAAKLNAHAN FHVPAPLAPE RRAPDSIQFN LVGMDDAQIE AFAKATADKG VKVQIFGRST DNARAFWNWQ FLKDLPELPE TRAMLMRACD VRLPVRLTQD ELDVIAQILL SSVEETMARA AA
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