| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1812 |
|---|
| Symbol | |
|---|
| ID | 4076958 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1904218 |
|---|
| End bp | 1904895 |
|---|
| Gene Length | 678 bp |
|---|
| Protein Length | 225 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638007127 |
|---|
| Product | tripartite ATP-independent periplasmic transporter DctQ |
|---|
| Protein accession | YP_613807 |
|---|
| Protein GI | 99081653 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.133229 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGGGG CAAGAACCGG CCCGTCGGGG TTCATCCACA CACTTGAGGA ATCGCTGATC
GCGCTGATCC TGGGAGCAAT GACCTTGCTC ACCTTTGCCA ATGTGATCGC GCGCTATGTC
TTCAATTCCA ACATCCTCTG GGCGCTCGAA GTCACGGTGT TCCTGTTTGC ATGGCTGGTG
CTTTTGGGCG CGGCTTATGC GGTGAAGGTA CACGCACATC TGGGCGTTGA TGCGATCATC
AATATGCTGC CCCAGGGCGC GCGGCGTATC CTCGGCCTCA TTGCGGCGGC TGCCTGCATC
ATTTTCTCGT TGCTGATGCT CAAGGGCGCC TATGACTATT GGGCCGTCTT TGCGGATCTG
CCGCCCACCT CGGGACGCTG GTTTCCCACC GGTTTCGACG TGAAGGCGCG CAGCCAGAGC
TTTTATGAGG TGCAGGACGT GCCCATGATC GGGGCGCTGC GTTTCCTTGA GGATCTCATC
AATTACGGCG ATTCCTACGA GAAGATGCCC AAGGTGGTGC CCTATCTCGT GTTGCCGCTG
TCGATGCTGT TGCTGGTGAT CCGCTTTGTT CAGGCGGCTG TTCAAATCCT GCGCGGGCAG
ACGGACCGTC TGGTTGCAAG TCACGAAGTC GAAGACGAAC TCGAAGCGGT TCGCGCTCAA
CGGGGAGAGC ATGACTGA
|
|---|
| Protein sequence | MSGARTGPSG FIHTLEESLI ALILGAMTLL TFANVIARYV FNSNILWALE VTVFLFAWLV
LLGAAYAVKV HAHLGVDAII NMLPQGARRI LGLIAAAACI IFSLLMLKGA YDYWAVFADL
PPTSGRWFPT GFDVKARSQS FYEVQDVPMI GALRFLEDLI NYGDSYEKMP KVVPYLVLPL
SMLLLVIRFV QAAVQILRGQ TDRLVASHEV EDELEAVRAQ RGEHD
|
|---|
| |