| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1811 |
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| Symbol | |
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| ID | 4076957 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1902842 |
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| End bp | 1904218 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638007126 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_613806 |
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| Protein GI | 99081652 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0867737 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGTGG TTCTTCTTTT TACACTGGTC ATTGGCCTTT TGCTGATCGG GGTGCCGATT
GCGGTTTCTC TGGGTCTGTC GTCCACCATT TTCCTGCTGA TCTATTCCGA CAGCTCGCTC
GGCTCGGTTG CAGGGACGTT GTTTCAGGCC TTTGAAGGGC ATTTCACCCT CTTGGCGATC
CCGTTCTTCA TCCTTGCGTC GAGCTTTATG ACCACGGGTG GTGTTGCACG CCGGATCATC
CGTTTCTCGA TTGCCTGTGT GGGCCACCTG CCGGGTGGTC TGGCGATTGC GGGGGTCTTT
GCCTGTATGC TCTTTGCTGC GCTGTCCGGC TCGTCGCCAG CAACCGTGGT TGCGATCGGG
ACAATCGTGA TCGCGGGCAT GCGCCAGGTG GGCTATTCCA AGGAGTTCGC CGCAGGTGTG
ATCTGTAACG CGGGCACGCT CGGTATCCTG ATCCCGCCGT CCATCGTGAT GGTGGTCTAC
GCCGCAGCGG TTGAGGTCTC GGTCGGGCGG ATGTTCCTTG CTGGTGTCAT TCCGGGCCTG
ATGGCGGGCA TCATGCTGAT GGTCACGATT TATGTGATGG CCAAGGTCAA GAACCTGCCC
AAAGGCGAGT GGAACGGCTG GGGAGAGGTC TTTGCCTCTG CGCGTGAAGC TGGCTGGGGT
CTGTTCCTGA TCGTGATCAT CCTGGGCGGC ATTTATGGCG GGATCTTCAC CCCGACCGAA
GCGGCAGCGG TTGCGGCTGT CTATGCCTTC TTCATCGCGT GTTTTGTCTA TAAGGACATG
GGGCCGCTTT CCAATGGAGA GGGGCAGCCC AAGGACTCGC TTCTGAAGAA ACCCTATGCG
CTGATCACCG CGTTTTTCCA CAGCGACACC AAACACACGC TGTTTGAGGC TGGCAAACTC
ACCGTGACGC TGTTGTTTGT GATCGCCAAC GCGCTGATCC TGAAGCATGT TCTGACCGAC
GAGCAGGTGC CGCAGCATAT TGCAAACGCG ATGCTCTCGG CAGGTTTTGG CCCAGTGATG
TTCCTGATCG TGGTGAACGT GATCCTGCTG ATTGGCGGTC AGTTCATGGA GCCCTCGGGC
CTCCTGGTGA TCGTGGCGCC CCTGGTGTTC CCGATTGCAA TCGAGCTGGG GATCGACCCC
ATTCACCTCG GGATCATCAT GGTTGTGAAC ATGGAGATCG GGATGATCAC ACCGCCGGTG
GGGCTCAACC TCTTTGTGAC CTCCGGGGTT GCGGGGATGC CGATGATGGC GGTCGTGAAG
GCTGCGCTGC CTTTCCTTGC GGTGCTCTTT GTGTTCCTCA TCATGGTCAC CTACATCCCG
GCGATCTCGA CCTTCCTGCC CAATATGATC ATGGGGCCTG AGATCATAAC CAACTGA
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| Protein sequence | MEVVLLFTLV IGLLLIGVPI AVSLGLSSTI FLLIYSDSSL GSVAGTLFQA FEGHFTLLAI
PFFILASSFM TTGGVARRII RFSIACVGHL PGGLAIAGVF ACMLFAALSG SSPATVVAIG
TIVIAGMRQV GYSKEFAAGV ICNAGTLGIL IPPSIVMVVY AAAVEVSVGR MFLAGVIPGL
MAGIMLMVTI YVMAKVKNLP KGEWNGWGEV FASAREAGWG LFLIVIILGG IYGGIFTPTE
AAAVAAVYAF FIACFVYKDM GPLSNGEGQP KDSLLKKPYA LITAFFHSDT KHTLFEAGKL
TVTLLFVIAN ALILKHVLTD EQVPQHIANA MLSAGFGPVM FLIVVNVILL IGGQFMEPSG
LLVIVAPLVF PIAIELGIDP IHLGIIMVVN MEIGMITPPV GLNLFVTSGV AGMPMMAVVK
AALPFLAVLF VFLIMVTYIP AISTFLPNMI MGPEIITN
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