Gene TM1040_1734 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1734 
Symbol 
ID4075798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1828535 
End bp1829737 
Gene Length1203 bp 
Protein Length400 aa 
Translation table11 
GC content59% 
IMG OID638007048 
Productaspartate aminotransferase 
Protein accessionYP_613729 
Protein GI99081575 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0436] Aspartate/tyrosine/aromatic aminotransferase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.395595 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGTTC TTTCTGCGAC ACTTTCCCGC GTGAAGCCTT CCCCGACCAT TGCCGTCACC 
AATAAGGCGC GTGAATTGAA AGCCGCCGGT CGCGACGTGA TCGGCCTTGG TGCGGGGGAA
CCGGATTTCG ACACGCCACA ATCCATCAAG GATGCCGCTG TCCGTGCCAT TGCCGAGGGC
AAGACCAAAT ACACAGCCGT CGATGGCATC CCGGAGCTGA AGCAGACCAT CTGCGAAAAG
TTCAAGCGTG ACAATGGCCT GGACTATCGC CCGGAGCAGG TCACGGTAAA CTCTGGCGGC
AAGCAGACGC TGTATAACGC CCTGATGGCG ACCCTCAATC CCGGCGATGA GGTGATCATC
CCCGCGCCCT ATTGGGTGAG CTATCCTGAC ATGGTGCTCC TTGCAGGAGG CACTCCGGTT
CCGGTGGAGG CCAGCCTTGA GAGCAGCTTC AAACTGACGC CCGATCAGTT GGAGGCCGCC
ATCACCGACA AGACCAAATG GTTCATCTTC AATTCTCCCT CCAACCCGAC CGGAGCCGGA
TATTCGCGCG CCGAATTGAA AGCTCTGACG GATGTCTTGA TGCGTCATCC CCATGTCTGG
GTGATGACCG ATGACATGTA TGAACACCTC GCCTATGACG ATTTCGAATT CTGCACACCG
GCGCAGGTTG AACCGGGACT CTATGACCGC ACCCTCACCT GCAACGGGGT TTCCAAAGCC
TATGCGATGA CTGGCTGGCG GATCGGCTAT GCGGCGGGTC CGGAAACTCT GATTGCGGCG
ATGCGCAAGG TGCAGTCGCA GTCTACCTCG AACCCCTGTT CGGTCAGCCA ATATGCCGCG
CTCGAAGCGC TCACGGGGCC GCAGGATTTC CTCGCCAGCA ACAATGAGAT CTTCGTGCGG
CGGCGCAATC TGGTGGTGTC GATGCTGTCG GAGATCGATG GCTTGACCTG CCCGGTGCCG
GAGGGCGCTT TTTATGTCTA CCCCTCGATC GCGGGTCTCA TTGGCAAGAC AACGCCAAAA
GGCGTAACCA TCAACAGCGA TGAGGATTTT GCCACCGCCC TTCTGGAAGA GGCCGATGTG
GCCGTGGTGT TTGGCGCAGC CTTTGGCCTC TCGCCGAATT TTCGTGTGAG CTATGCAACC
TCCGATGACG CCCTCAAGGA AGCCTGCACG CGCATCCAGC GCTTCTGCGC CTCGCTCAGC
TGA
 
Protein sequence
MSVLSATLSR VKPSPTIAVT NKARELKAAG RDVIGLGAGE PDFDTPQSIK DAAVRAIAEG 
KTKYTAVDGI PELKQTICEK FKRDNGLDYR PEQVTVNSGG KQTLYNALMA TLNPGDEVII
PAPYWVSYPD MVLLAGGTPV PVEASLESSF KLTPDQLEAA ITDKTKWFIF NSPSNPTGAG
YSRAELKALT DVLMRHPHVW VMTDDMYEHL AYDDFEFCTP AQVEPGLYDR TLTCNGVSKA
YAMTGWRIGY AAGPETLIAA MRKVQSQSTS NPCSVSQYAA LEALTGPQDF LASNNEIFVR
RRNLVVSMLS EIDGLTCPVP EGAFYVYPSI AGLIGKTTPK GVTINSDEDF ATALLEEADV
AVVFGAAFGL SPNFRVSYAT SDDALKEACT RIQRFCASLS