| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1625 |
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| Symbol | |
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| ID | 4077727 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1732375 |
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| End bp | 1734075 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006938 |
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| Product | phage terminase |
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| Protein accession | YP_613620 |
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| Protein GI | 99081466 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4626] Phage terminase-like protein, large subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000276041 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.989877 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTCGATG CGTTCATTGA TCCTGCTGAG CGGGCGGCTT GGTCCACGGC GGTTCCGGAC
TGGGAAGAGC GGATCCTCAA TCGGCAATCG CTGATCCCGG ATCTTCCGTT GTGGGACGAG
CCAGCTGAGC GGGCGCTGCG GATCTTCAAA CGGCTTCGGG TTCCCGATCT TATCGGGCAA
CCTACCTACG GCGAGGTCAG CGATCAGTGG GTCTTTGATC TGGTGCGTGC CATCTTCGGC
AGCTACGACC CAGTCAAGAA ACGGCGGATG CTGCGGGAAT TTTTCCTGCT GATCCCAAAG
AAGAACGGGA AGTCGGCGAT CGCGGCGGCG ATCATCCTGA CCGCCTGCAT CATGAATGAA
CGGCCTGAAG CGGAGCTGCT GCTGATCGCC CCTACGATGA CGATCGCCAA GATCTCCTTC
AAACAGATCA AGGGGATCAT CCGGGCCGAT CCGGAGCTGG ACAAGCGGTT CCATATTCAA
GATCACGCCC GGATGATCAC GCATCTGGTC AGCAAGGCGG AGATCTCGGT AAAGGCCGCT
GATGGGGACG TCATCACCGG TGGCAAGGCC ACCTATACGA TGATTGACGA AACCCACGAG
TTTGCCCGCA AGAGCAAGGC GGACGGAGTT TTTCTCGAAC TGCGGGGGGC ATTGGCATCC
CGGCCTGAAG GGTTTGTGAT GCAGATCACT ACCCAATCAA AGGAACAGCC CGCCGGCGTG
TTCAAGGCTG AGCTCGAGAC CGCGCGTGCC GTGCGGGACG GGCGGTTGCA GTCGCCGATG
TTGGCCGTGC TCTATGAGTT GCCCAAAAAG CTGGCCAAAA GCTGGCAGAA GCAAGAGACT
TGGGCGCTGG TCAATCCGCA CCTCGGCCGA TCTGTCGATC CGGCCTTCCT GCAGGACCAG
CTGGTCAAGG CGCGTGAAAA AGGGCCGAAA GAGCTGCAGC TGTTGGCCTC TCAGCACTTC
AACGTCGAAA TCGGCGTCGG CCTCGGTGGC GGATGGACCG GCGCGCACTA TTGGAAGAAA
GCAGGGCCGC AGACGTTCGG CCTTGATGAG TTGATTGCCC GGTCTGACGT AGCGGTTGTT
GGGCTAGACG GCGGCGGTCT GGATGACCTG TTTGGGCTGG CCGTGGTCGG GCGCGAGATC
GAGACCAAAA ATTGGTTGAT GTGGTTCCAC GCCTGGGCGC ATCCAGAAGT GCTGCGGGTG
CGTAAGGAGA TTGCGTCGCG TCTGGGTGAT TTCGCCAAGG CTGGCGATCT TATTCTACTG
GGTGAGGACG AGCCAACGGG AGATATCGAG GGCGCAGCGC GGATTGTTGG CAAACTTCTC
GAGGCGCAGT TGCTGCCGGA GGAGGCCGCA ATCGGGCTGG ATACGGTGCA GGTCTACGCG
ATCCTCGAAG AATTGATGTC GATCGGTGTC GCGGAAGATC AGCTACGCAA CATCGGTCAA
GACTGGCGCT TGTCACCGGC GATCTGGGGC ATGGAGCGGA AGCTGAAAGA CGGCACGCTG
TTGCACAGCG GGCAACCGAT GATGGAGTGG GTGCTTGGCA ACGCCAAGGT TGAACAGCGC
GGTTCTGCCG TGCGGATGAC CAAAGAGGCC GCGGGGCGGG CCAAGATCGA CCCCCTGATT
GCCGGCATGA ACGCCTTTAC CTTGATGAGC CGCAATCCGG TTGCGGCGGG GTCCAAGACC
TTCGTTTACA ACGGGATGTG A
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| Protein sequence | MLDAFIDPAE RAAWSTAVPD WEERILNRQS LIPDLPLWDE PAERALRIFK RLRVPDLIGQ
PTYGEVSDQW VFDLVRAIFG SYDPVKKRRM LREFFLLIPK KNGKSAIAAA IILTACIMNE
RPEAELLLIA PTMTIAKISF KQIKGIIRAD PELDKRFHIQ DHARMITHLV SKAEISVKAA
DGDVITGGKA TYTMIDETHE FARKSKADGV FLELRGALAS RPEGFVMQIT TQSKEQPAGV
FKAELETARA VRDGRLQSPM LAVLYELPKK LAKSWQKQET WALVNPHLGR SVDPAFLQDQ
LVKAREKGPK ELQLLASQHF NVEIGVGLGG GWTGAHYWKK AGPQTFGLDE LIARSDVAVV
GLDGGGLDDL FGLAVVGREI ETKNWLMWFH AWAHPEVLRV RKEIASRLGD FAKAGDLILL
GEDEPTGDIE GAARIVGKLL EAQLLPEEAA IGLDTVQVYA ILEELMSIGV AEDQLRNIGQ
DWRLSPAIWG MERKLKDGTL LHSGQPMMEW VLGNAKVEQR GSAVRMTKEA AGRAKIDPLI
AGMNAFTLMS RNPVAAGSKT FVYNGM
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