| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1548 |
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| Symbol | |
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| ID | 4075846 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1654635 |
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| End bp | 1656215 |
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| Gene Length | 1581 bp |
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| Protein Length | 526 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006861 |
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| Product | 5'-nucleotidase-like |
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| Protein accession | YP_613543 |
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| Protein GI | 99081389 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00999704 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.364034 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTTCAC GTTTTCTGAC GTCGGCAGCG GCGCTGGGGC TTACGGCTGG CATGGCCGCG
GCCGAGTACA AGCTGACGAT CTTGCACACC AACGACATCC ACAGCCGCAT CGAGTCGATC
AGCAAATATG ATTCCACTTG CGGCGCCGAT GACGAGGCCG AGGGCAAGTG TTTTGGCGGC
ATCGCCCGCG TCAAGACCAT GGTCGACACC AAACGTGCCG AGCTCGACGG CCAGAACGTG
CTTCTGCTGG ACGCGGGCGA CCCGTTCCAG GGCTCGCTGT TTTACACCAC CTACAAGGGG
GCAGCCGAAG CCGAGTTCAT GGAAGACATC GGCTATGACG TAATGGCGGT GGGCAACCAC
GAATTTGACG ACGGACCGGC CGGTCTGCAG CAATTTGTCG ACACTGTGTC TTTCCCGGTG
ATTTCCGGCA ACCTCGATCT GAGCTCCGAG CCGCTCCTGA AAGGCAAGGT GGGCAACCAT
GTCGTGCTTG AAGTGGGCGG CGAGAAAATC GGCATCATCT CCGCGCTGGC GACAGACACG
GTCGAGACCT CCTCGCCGGG GCCGAATGTG GTGTTTCAGG ATGAGATCGA CAGCCTGATC
GCCGACGTTG AGGCCCTGCA GGCAGAAGGC GTCAACAAGA TCATCGCGCT GACCCATGTG
GGTCTGGCCA AGGATATGGA AATCGCCGCC AAAGTGCCGG GGGTGGATCT CGTCGTGGGT
GGTCATTCGC ACACGCTTTT GTCCAACACC TCTGATCGTG CCGCGGGCGC ATATCCGACC
ATGGTGGGCG ATGTGCCAGT GGTGCAGGCC TATGCCTATA CCAAGTACCT GGGCGAGCTC
ACTGTGACCT TTGATGACGA AGGCAATGTC ATCTCCGCTG CGGGCGAGCC GATCCTGCTT
GATGCCTCTG TGACGCCGGA TGCCGACATG GTCGCGCGCA TCAAGGAGAT GGGTGCTCCC
ATCGATGAGA TGAAAACCCG CGTGGTTGCC GAGACAACCG ATGCGGTCGA AGGCTCGCGT
GATGTCTGCC GCGCTGGCGA ATGTGCCATG GGCAACCTCG TCGCGGATGC CATGCTGGCC
CGCGTCAAGG ATCAGGGTGT GAGCATTGCG ATCCAGAACG GTGGCGGTCT GCGCGCATCG
ATCGATGCGG GCGAAGTCAC CATGGGTGAA GTGCTGAGCG TCCTGCCGTT CCAGAACACG
CTCTCCACCT TTGAGGTCTC CGGCCAGACG ATGATTGAGG CCTTGGAAAA CGGCGTTGGG
CAGATCGAGG ACGGCGCAGG CCGCTTCCCG CAGGTTGCAG GGCTGAAATA TGCGTTTGAC
GCCTCCAAGG AGCCGGGCGC GCGCATTTCC GACGTGATGG TCATGGAAGG CGAGACCTGG
GTTGCGATTG ATCCGGCCAA AACCTACGGC GTTGTGTCCA ACAACTACGT GCGCAATGGC
GGCGACGGCT ACAAGATGTT CGCAGGCGAC GACAAGAACG CTTATGACTT TGGCCCCGAC
CTTGCGGATG TTGTTGCCGA ATACCTCGCC GAGGTCGGCC CCTACAGCGC CTATACCGAC
GGCCGCATCA CCAAGAAGTA A
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| Protein sequence | MISRFLTSAA ALGLTAGMAA AEYKLTILHT NDIHSRIESI SKYDSTCGAD DEAEGKCFGG
IARVKTMVDT KRAELDGQNV LLLDAGDPFQ GSLFYTTYKG AAEAEFMEDI GYDVMAVGNH
EFDDGPAGLQ QFVDTVSFPV ISGNLDLSSE PLLKGKVGNH VVLEVGGEKI GIISALATDT
VETSSPGPNV VFQDEIDSLI ADVEALQAEG VNKIIALTHV GLAKDMEIAA KVPGVDLVVG
GHSHTLLSNT SDRAAGAYPT MVGDVPVVQA YAYTKYLGEL TVTFDDEGNV ISAAGEPILL
DASVTPDADM VARIKEMGAP IDEMKTRVVA ETTDAVEGSR DVCRAGECAM GNLVADAMLA
RVKDQGVSIA IQNGGGLRAS IDAGEVTMGE VLSVLPFQNT LSTFEVSGQT MIEALENGVG
QIEDGAGRFP QVAGLKYAFD ASKEPGARIS DVMVMEGETW VAIDPAKTYG VVSNNYVRNG
GDGYKMFAGD DKNAYDFGPD LADVVAEYLA EVGPYSAYTD GRITKK
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