Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1474 |
Symbol | |
ID | 4077771 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 1574347 |
End bp | 1575504 |
Gene Length | 1158 bp |
Protein Length | 385 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638006785 |
Product | ribonuclease D |
Protein accession | YP_613469 |
Protein GI | 99081315 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0349] Ribonuclease D |
TIGRFAM ID | [TIGR01388] ribonuclease D |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.366853 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACTC TGACCACCAC CGACGAGCTG CGCGCCTTTT GCCAAGAGGC CGCGAAATAC CCTTATGTGA CGGTGGACAC CGAGTTTCTG CGAGAGCGCA CCTATTACTC TAAGCTTTGC CTGATCCAGA TTGCCTATCG CGGTGATGGG GAAACCGACG CCGTGCTGGT TGACCCGCTT TCCGGGGATT TGTCGCTCGA ACCCTTGTAC GAGCTTTTCC GCAATGAGGA TGTGGTAAAG GTCTTTCACG CCGCGCGGCA GGATCTGGAG ATTTTCTGGG TGGATGCGGG CGTTTTTCCA AAACCGCTGT TTGACACCCA GGTTGCGGCC ATGGTGTGCG GCTTTGGCGA GCAGGTCGGC TACGAGACGC TGGTGCGCAA GATTTGCAAG CAAGGCCTTG ATAAGACATC CCGCTTTACA GACTGGTCCC GCCGTCCACT CTCGGATGCG CAAAAGACTT ATGCTCTGGC GGATGTCACC CATCTGCGCC AGATATACGA GCATCTGCGC AAAGAGCTCG ACAAGACCAA GCGCAGCCAT TGGGTTGCCG AGGAGTTGCA GGTCCTGACC GACCCCGCAA CCTATAACAT TCAGCCGCGT GAGGCTTGGC GCCGGGTGAA AACCCGCACC AACTCCGGGC GTTTCCTTGC AGTGGTGCGC GAGCTGGCGG CCTTTCGCGA AGAATATGCG CAAACCAACA ATGTGCCGCG CAATCGCGTC TACAAGGATG ATGCCCTGGT GGAACTGGCT TCCACCAAGC CCCGGACCGC GTCGGATCTG GGGGGATCAC GCCTGTTGCT GCGGGAGGCG CGCAAAGGCG CCATTGCCGA AGGCATTCTA AAAGCGGTCG AGCGCGGTGT GAACTGTCCG CAGGACGACA TGCCTCAGGC GGATCGCTCG CGCGAGAAAA TGCAGATCAA TGGCGCACTT GCCGATCTGC TGCGGGTCCT GCTCAAGGCC AAGACCGAGA CCTCTGGCGT GGCGGCGAAA CTGATCGCCC CTTCGGCGGA TCTGGATGCA ATCGCCGCCG GGGAGCGCGA TGTTCCTGCG CTAAAAGGCT GGCGGCACGA GGTCTTTGGC GCGGATGCGT TGCGCCTGTG CAATGGAGAG ATTGCGCTCG CGGCCAAAGG CCAGCAGGTG AAGGTTGTTG ACCTCTAG
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Protein sequence | MKTLTTTDEL RAFCQEAAKY PYVTVDTEFL RERTYYSKLC LIQIAYRGDG ETDAVLVDPL SGDLSLEPLY ELFRNEDVVK VFHAARQDLE IFWVDAGVFP KPLFDTQVAA MVCGFGEQVG YETLVRKICK QGLDKTSRFT DWSRRPLSDA QKTYALADVT HLRQIYEHLR KELDKTKRSH WVAEELQVLT DPATYNIQPR EAWRRVKTRT NSGRFLAVVR ELAAFREEYA QTNNVPRNRV YKDDALVELA STKPRTASDL GGSRLLLREA RKGAIAEGIL KAVERGVNCP QDDMPQADRS REKMQINGAL ADLLRVLLKA KTETSGVAAK LIAPSADLDA IAAGERDVPA LKGWRHEVFG ADALRLCNGE IALAAKGQQV KVVDL
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